RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SCML1Q9UN30 329 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 SIK3Q9Y2K2 1263 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 DAAM1Q9Y4D1 1078 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 CKAP5Q14008 2032 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 SPTBN2O15020 2390 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 LRRC10BA6NIK2 292 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 BCAT2O15382 392 aaPredicted RBP21.35■■□□□ 1.01
CLN3-219ENST00000565778 CLDN11O75508 207 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 SEMA4FO95754 770 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 STK19P49842 368 aaPredicted RBP21.35■■□□□ 1.01
CLN3-219ENST00000565778 OTUD1Q5VV17 481 aaPredicted RBP21.35■■□□□ 1.01
CLN3-219ENST00000565778 CXorf57Q6NSI4 855 aaKnown RBP21.35■■□□□ 1.01
CLN3-219ENST00000565778 LRRC31Q6UY01 552 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 MMAAQ8IVH4 418 aaKnown RBP21.35■■□□□ 1.01
CLN3-219ENST00000565778 ZCCHC9Q8N567 271 aaKnown RBP21.35■■□□□ 1.01
CLN3-219ENST00000565778 DEFB124Q8NES8 71 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 PGAP3Q96FM1 320 aaPredicted RBP21.35■■□□□ 1.01
CLN3-219ENST00000565778 FEM1AQ9BSK4 669 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 SGK2Q9HBY8 427 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 FBXL12Q9NXK8 326 aa21.35■■□□□ 1.01
CLN3-219ENST00000565778 NCOR2Q9Y618 2525 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 FAM47DPA6NHR8 397 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 LGALS16A8MUM7 142 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 CHRNB2P17787 502 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 SLC8A1P32418 973 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 FLT3P36888 993 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 IRAK1P51617 712 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 CDH4P55283 916 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 JAM2P57087 298 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 TYRO3Q06418 890 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 CST6Q15828 149 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 ACCSLQ4AC99 568 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 PHLDB2Q86SQ0 1253 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 SLC30A5Q8TAD4 765 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 CFAP57Q96MR6 1250 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 FAM129BQ96TA1 746 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 OMDQ99983 421 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 ZDHHC5Q9C0B5 715 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 PABPC3Q9H361 631 aaKnown RBP21.34■■□□□ 1.01
CLN3-219ENST00000565778 ANLNQ9NQW6 1124 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 TMEM59LQ9UK28 342 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 SNX10Q9Y5X0 201 aa21.34■■□□□ 1.01
CLN3-219ENST00000565778 ITIH6Q6UXX5 1313 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 MID1O15344 667 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 FSBPO95073 299 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 CYP1A1P04798 512 aaPredicted RBP21.33■■□□□ 1.01
CLN3-219ENST00000565778 FMO1Q01740 532 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 SEMA3BQ13214 749 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 NCAPHQ15003 741 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 C5orf22Q49AR2 442 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 USP30Q70CQ3 517 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 STK40Q8N2I9 435 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 AOPEPQ8N6M6 819 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 OR52K2Q8NGK3 314 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 PTPRN2Q92932 1015 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 ALG14Q96F25 216 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 C1orf74Q96LT6 269 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 CNTNAP3BQ96NU0 1288 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 CNTNAP3Q9BZ76 1288 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 NAT10Q9H0A0 1025 aaKnown RBP21.33■■□□□ 1.01
CLN3-219ENST00000565778 MUC3BQ9H195 1237 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 NEUROG2Q9H2A3 272 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 TMEM63CQ9P1W3 806 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 SLC25A13Q9UJS0 675 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 VPS28Q9UK41 221 aa21.33■■□□□ 1.01
CLN3-219ENST00000565778 PI4KAP42356 2102 aa21.32■■□□□ 1
CLN3-219ENST00000565778 A0A1W2PP55 124 aa21.32■■□□□ 1
CLN3-219ENST00000565778 RNASEH2AO75792 299 aaKnown RBP21.32■■□□□ 1
CLN3-219ENST00000565778 CNTN5O94779 1100 aa21.32■■□□□ 1
CLN3-219ENST00000565778 MMP8P22894 467 aa21.32■■□□□ 1
CLN3-219ENST00000565778 GRIK2Q13002 908 aa21.32■■□□□ 1
CLN3-219ENST00000565778 ACBD5Q5T8D3 534 aaPredicted RBP21.32■■□□□ 1
CLN3-219ENST00000565778 TRNP1Q6NT89 227 aa21.32■■□□□ 1
CLN3-219ENST00000565778 TRIM72Q6ZMU5 477 aa21.32■■□□□ 1
CLN3-219ENST00000565778 ARCQ7LC44 396 aa21.32■■□□□ 1
CLN3-219ENST00000565778 EMC1Q8N766 993 aa21.32■■□□□ 1
CLN3-219ENST00000565778 BIRC7Q96CA5 298 aa21.32■■□□□ 1
CLN3-219ENST00000565778 METTL5Q9NRN9 209 aaKnown RBP21.32■■□□□ 1
CLN3-219ENST00000565778 TMPRSS4Q9NRS4 437 aa21.32■■□□□ 1
CLN3-219ENST00000565778 DNAAF2Q9NVR5 837 aaKnown RBP21.32■■□□□ 1
CLN3-219ENST00000565778 ANGPTL2Q9UKU9 493 aa21.32■■□□□ 1
CLN3-219ENST00000565778 TBC1D30Q9Y2I9 924 aa21.32■■□□□ 1
CLN3-219ENST00000565778 ZBTB32Q9Y2Y4 487 aaPredicted RBP21.32■■□□□ 1
CLN3-219ENST00000565778 MUC22E2RYF6 1773 aaPredicted RBP21.31■■□□□ 1
CLN3-219ENST00000565778 UPK3BL1B0FP48 263 aa21.31■■□□□ 1
CLN3-219ENST00000565778 UPK3BL2E5RIL1 263 aa21.31■■□□□ 1
CLN3-219ENST00000565778 I6L893 689 aaPredicted RBP21.31■■□□□ 1
CLN3-219ENST00000565778 SRGAP2O75044 1071 aa21.31■■□□□ 1
CLN3-219ENST00000565778 IL1BP01584 269 aa21.31■■□□□ 1
CLN3-219ENST00000565778 RHOCP08134 193 aa21.31■■□□□ 1
CLN3-219ENST00000565778 VAV1P15498 845 aa21.31■■□□□ 1
CLN3-219ENST00000565778 PMLP29590 882 aa21.31■■□□□ 1
CLN3-219ENST00000565778 RDXP35241 583 aaKnown RBP21.31■■□□□ 1
CLN3-219ENST00000565778 PSMD8P48556 350 aa21.31■■□□□ 1
CLN3-219ENST00000565778 CSNK1EP49674 416 aaKnown RBP21.31■■□□□ 1
CLN3-219ENST00000565778 ATP11AP98196 1134 aa21.31■■□□□ 1
CLN3-219ENST00000565778 ZNF252P-AS1Q0IIN9 211 aa21.31■■□□□ 1
CLN3-219ENST00000565778 ALFQ53S48 1182 aa21.31■■□□□ 1
CLN3-219ENST00000565778 ERGIC2Q96RQ1 377 aa21.31■■□□□ 1
CLN3-219ENST00000565778 HAPLN3Q96S86 360 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms