RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CNNM4Q6P4Q7 775 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 ZNF574Q6ZN55 896 aaPredicted RBP7.58□□□□□ -1.2
VPS4A-203ENST00000564399 MMS22LQ6ZRQ5 1243 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 UNC45BQ8IWX7 931 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 SIX6OS1Q8N1H7 587 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 EXD3Q8N9H8 876 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 ANKRD52Q8NB46 1076 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 KDM1BQ8NB78 822 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 ATXN7L3BQ96GX2 97 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 RPL10LQ96L21 214 aaKnown RBP7.58□□□□□ -1.2
VPS4A-203ENST00000564399 APOLD1Q96LR9 279 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 SLC46A1Q96NT5 459 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 USP28Q96RU2 1077 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 DDX50Q9BQ39 737 aaKnown RBP7.58□□□□□ -1.2
VPS4A-203ENST00000564399 CALN1Q9BXU9 219 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 BACH2Q9BYV9 841 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 IRX2Q9BZI1 471 aaPredicted RBP7.58□□□□□ -1.2
VPS4A-203ENST00000564399 MMRN2Q9H8L6 949 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 ABCC13Q9NSE7 274 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 KLHL11Q9NVR0 708 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 DMAC2Q9NW81 257 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 ARHGAP20Q9P2F6 1191 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 FRMD4BQ9Y2L6 1034 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 MYO9AB2RTY4 2548 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 UBR5O95071 2799 aaPredicted RBP7.57□□□□□ -1.2
VPS4A-203ENST00000564399 ICE1Q9Y2F5 2266 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 PVALEFA0A1B0GWK0 134 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 CPED1A4D0V7 1026 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 NEMP2A6NFY4 417 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 YJEFN3A6XGL0 299 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 C10orf142B7Z368 130 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 E7ENQ6 273 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 TULP2O00295 520 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 TERTO14746 1132 aaKnown RBP7.57□□□□□ -1.2
VPS4A-203ENST00000564399 SLC31A1O15431 190 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 SLC7A4O43246 635 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 PIAS2O75928 621 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 NR3C1P04150 777 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 NEFLP07196 543 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 TRIM49P0CI25 452 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 TRIM49CP0CI26 452 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 DRD3P35462 400 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 AFMP43652 599 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 NUMBP49757 651 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 VAMP7P51809 220 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 METAP1P53582 386 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 TBX4P57082 545 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 RPS24P62847 133 aaKnown RBP7.57□□□□□ -1.2
VPS4A-203ENST00000564399 ADIGQ0VDE8 80 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 KCNMA1Q12791 1236 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 ELAVL3Q14576 367 aaKnown RBP7.57□□□□□ -1.2
VPS4A-203ENST00000564399 GOLGA7BQ2TAP0 167 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 ARL13BQ3SXY8 428 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 FAM133BQ5BKY9 247 aaKnown RBP7.57□□□□□ -1.2
VPS4A-203ENST00000564399 FSCBQ5H9T9 825 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 FAM46CQ5VWP2 391 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 ARHGAP17Q68EM7 881 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 IGF2-ASQ6U949 168 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 USP53Q70EK8 1073 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 BHLHA9Q7RTU4 235 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 DSG4Q86SJ6 1040 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 TRIM69Q86WT6 500 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 SLC9A9Q8IVB4 645 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 CFAP52Q8N1V2 620 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 ARL14Q8N4G2 192 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 TTC39CQ8N584 583 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 SLC4A11Q8NBS3 891 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 IFI44Q8TCB0 444 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 TAS1R2Q8TE23 839 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 KLK6Q92876 244 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 PTPRN2Q92932 1015 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 TATDN2Q93075 761 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 LMLNQ96KR4 655 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 CCNL2Q96S94 520 aaPredicted RBP7.57□□□□□ -1.2
VPS4A-203ENST00000564399 KDM4CQ9H3R0 1056 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 NLGN3Q9NZ94 848 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 HESX1Q9UBX0 185 aa7.57□□□□□ -1.2
VPS4A-203ENST00000564399 ITIH6Q6UXX5 1313 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 CACNA1DQ01668 2161 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 USP9YO00507 2555 aaPredicted RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 A0A1W2PNU3 283 aaPredicted RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 K7ESM1 405 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 XPO1O14980 1071 aaKnown RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 SPTLC2O15270 562 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 POLR2DO15514 142 aaKnown RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 PLRG1O43660 514 aaKnown RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 RNGTTO60942 597 aaKnown RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 NEBLO76041 1014 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 TNFSF15O95150 251 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 LUC7L3O95232 432 aaKnown RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 GJB6O95452 261 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 KRT13P13646 458 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 LCP1P13796 627 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 CD19P15391 556 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 VAV1P15498 845 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 PRLRP16471 622 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 ZNF18P17022 549 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 TGM2P21980 687 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 STK19P49842 368 aaPredicted RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 RAD23BP54727 409 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms