RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 YWHAZP63104 245 aaKnown RBP17.41■□□□□ 0.38
CLN3-211ENST00000564091 ACAP1Q15027 740 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 INAVAQ3KP66 663 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 SND1Q7KZF4 910 aaKnown RBP eCLIP17.41■□□□□ 0.381e-8■■■□□ 16.2
CLN3-211ENST00000564091 ZNF606Q8WXB4 792 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 SKA1Q96BD8 255 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 BTN2A3PQ96KV6 586 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 SRRTQ9BXP5 876 aaKnown RBP17.41■□□□□ 0.38
CLN3-211ENST00000564091 POPDC2Q9HBU9 364 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 DKK4Q9UBT3 224 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.41■□□□□ 0.38
CLN3-211ENST00000564091 ITIH6Q6UXX5 1313 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 SYNJ2BP-COX16A0A087WUM0 186 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 BICDL2A1A5D9 508 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 F5H5T6 163 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 PLK4O00444 970 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 THAP12O43422 761 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 ITGAVP06756 1048 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 ABCB4P21439 1286 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 C5AR1P21730 350 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 CCR5P51681 352 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 PPP2CBP62714 309 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 PPP2CAP67775 309 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 DNAJC3Q13217 504 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 EIF4EBP2Q13542 120 aaPredicted RBP17.4■□□□□ 0.38
CLN3-211ENST00000564091 MORC3Q14149 939 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 SOWAHCQ53LP3 525 aaPredicted RBP17.4■□□□□ 0.38
CLN3-211ENST00000564091 GJB7Q6PEY0 223 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.4■□□□□ 0.38
CLN3-211ENST00000564091 ELOA2Q8IYF1 753 aaPredicted RBP17.4■□□□□ 0.38
CLN3-211ENST00000564091 CCAR2Q8N163 923 aaKnown RBP17.4■□□□□ 0.38
CLN3-211ENST00000564091 SAP25Q8TEE9 199 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 LRIG1Q96JA1 1093 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 SERAC1Q96JX3 654 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 MED15Q96RN5 788 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 PRMT1Q99873 361 aaKnown RBP17.4■□□□□ 0.38
CLN3-211ENST00000564091 TRIM62Q9BVG3 475 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 THAP9Q9H5L6 903 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 GDF3Q9NR23 364 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 COX16Q9P0S2 106 aa17.4■□□□□ 0.38
CLN3-211ENST00000564091 MUC22E2RYF6 1773 aaPredicted RBP17.4■□□□□ 0.38
CLN3-211ENST00000564091 GOLGA4Q13439 2230 aaKnown RBP17.39■□□□□ 0.37
CLN3-211ENST00000564091 ASXL3Q9C0F0 2248 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 URB1O60287 2271 aaKnown RBP17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3DA0A087WVF3 549 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3IA0A087WXS9 549 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3EA0A087X179 549 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3KA0A087X1G2 549 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3FA6NER0 549 aaPredicted RBP17.39■□□□□ 0.37
CLN3-211ENST00000564091 KCNU1A8MYU2 1149 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3LB9A6J9 549 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 ENC1O14682 589 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 MED7O43513 233 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 GNA14O95837 355 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 ADH1BP00325 375 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3HP0C7X1 549 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 GNA15P30679 374 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 DRD3P35462 400 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 NNMTP40261 264 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 PDCLQ13371 301 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 ELAVL3Q14576 367 aaKnown RBP17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3GQ6DHY5 549 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3CQ6IPX1 549 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 FOXR2Q6PJQ5 311 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 TBC1D3Q8IZP1 549 aaPredicted RBP17.39■□□□□ 0.37
CLN3-211ENST00000564091 DEFB106AQ8N104 65 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 EID2Q8N6I1 236 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 PDCD7Q8N8D1 485 aaKnown RBP17.39■□□□□ 0.37
CLN3-211ENST00000564091 ATP6V0D2Q8N8Y2 350 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 CNDP2Q96KP4 475 aaKnown RBP17.39■□□□□ 0.37
CLN3-211ENST00000564091 CRACR2AQ9BSW2 395 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 FAM204AQ9H8W3 233 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.39■□□□□ 0.37
CLN3-211ENST00000564091 SLC12A6Q9UHW9 1150 aa17.39■□□□□ 0.37
CLN3-211ENST00000564091 TLR4O00206 839 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 RTN2O75298 545 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 LDOC1O95751 146 aaPredicted RBP17.38■□□□□ 0.37
CLN3-211ENST00000564091 USP8P40818 1118 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 MARSP56192 900 aaKnown RBP17.38■□□□□ 0.37
CLN3-211ENST00000564091 NXPH1P58417 271 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 CDK17Q00537 523 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 APBA1Q02410 837 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 BNIP3Q12983 259 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 PAK1Q13153 545 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 MEA1Q16626 185 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 CXorf57Q6NSI4 855 aaKnown RBP17.38■□□□□ 0.37
CLN3-211ENST00000564091 FBXL22Q6P050 247 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 TMPRSS12Q86WS5 348 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 WDTC1Q8N5D0 677 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 FRS2Q8WU20 508 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 RNF34Q969K3 372 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 DDIT4Q9NX09 232 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 SARDHQ9UL12 918 aa17.38■□□□□ 0.37
CLN3-211ENST00000564091 BECN2A8MW95 431 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 GRAP2O75791 330 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 JUPP14923 745 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 EPHA8P29322 1005 aaPredicted RBP17.37■□□□□ 0.37
CLN3-211ENST00000564091 MAT2AP31153 395 aaKnown RBP17.37■□□□□ 0.37
CLN3-211ENST00000564091 GGCXP38435 758 aa17.37■□□□□ 0.37
CLN3-211ENST00000564091 IRAK1P51617 712 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms