RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CUL3Q13618 768 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 CYLC2Q14093 348 aaPredicted RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 RAB39AQ14964 217 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 PTPN21Q16825 1174 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 INSCQ1MX18 579 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 Q3ZCU0 254 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 PABPC1LQ4VXU2 614 aaKnown RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 FBXO48Q5FWF7 155 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 TCTE1Q5JU00 501 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 OR7E24Q6IFN5 339 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 TMEM53Q6P2H8 277 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 FAM173BQ6P4H8 233 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 NUP54Q7Z3B4 507 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 CNTROBQ8N137 903 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 CCDC33Q8N5R6 958 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 SLC4A11Q8NBS3 891 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 DENND6BQ8NEG7 585 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 OR8K3Q8NH51 312 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 PLBD2Q8NHP8 589 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 GOT1L1Q8NHS2 421 aaPredicted RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 CAGE1Q8TC20 777 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 IFI44Q8TCB0 444 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 SLC22A8Q8TCC7 542 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 NSUN6Q8TEA1 469 aaKnown RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 CAVIN3Q969G5 261 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 TTC17Q96AE7 1141 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 C11orf24Q96F05 449 aaPredicted RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 NLRP4Q96MN2 994 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 NR1H4Q96RI1 486 aaPredicted RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 MYD88Q99836 296 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 NYXQ9GZU5 481 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 C2orf40Q9H1Z8 148 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 ADNPQ9H2P0 1102 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 FANCEQ9HB96 536 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 PARVBQ9HBI1 364 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 SDHAF3Q9NRP4 125 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 ANO10Q9NW15 660 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 SLC39A1Q9NY26 324 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 EHD2Q9NZN4 543 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 KIF17Q9P2E2 1029 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 HESX1Q9UBX0 185 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 AMACRQ9UHK6 382 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 RASAL2Q9UJF2 1139 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 CFL2Q9Y281 166 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 CRYL1Q9Y2S2 319 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 C15orf41Q9Y2V0 281 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 NCOA3Q9Y6Q9 1424 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 A0A087WUV0 522 aaPredicted RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 A0A0B4J269 797 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 MYADML2A6NDP7 307 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 TMEM247A6NEH6 219 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 CCDC154A6NI56 674 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 C16orf96A6NNT2 1141 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 M0R3H8 397 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 THAP12O43422 761 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 HAUS5O94927 633 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 ITGAMP11215 1152 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 EDNRBP24530 442 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 ACAT1P24752 427 aaKnown RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 MAPK3P27361 379 aaPredicted RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 KRT9P35527 623 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 PSMC2P35998 433 aaKnown RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 GRK6P43250 576 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 NPTX2P47972 431 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 SEC24CP53992 1094 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 NLRP5P59047 1200 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 EIF4A1P60842 406 aaKnown RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 CSNK2BP67870 215 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 TPM4P67936 248 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 HSD11B2P80365 405 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 BEX3Q00994 111 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 NIPAL4Q0D2K0 466 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 SCAPQ12770 1279 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 MSLNQ13421 630 aaPredicted RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 DHX34Q14147 1143 aaKnown RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 SPARCL1Q14515 664 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 NAA25Q14CX7 972 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 MAPKAPK3Q16644 382 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 MINDY4Q4G0A6 757 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 XKR9Q5GH70 373 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 OLFM4Q6UX06 510 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 RGS9BPQ6ZS82 235 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 FAM47EQ6ZV65 393 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 RAB11FIP2Q7L804 512 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 KRT74Q7RTS7 529 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 DNAJB7Q7Z6W7 309 aaPredicted RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 GLCCI1Q86VQ1 547 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 UNC45BQ8IWX7 931 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 SLC15A3Q8IY34 581 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 NUP93Q8N1F7 819 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 DCBLD1Q8N8Z6 715 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 KCNH5Q8NCM2 988 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 FAM216AQ8WUB2 273 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 ASB10Q8WXI3 467 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 SLC9A6Q92581 669 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 KIFAP3Q92845 792 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 EFHD2Q96C19 240 aaPredicted RBP5.33□□□□□ -1.56
VPS35-205ENST00000563984 TUBGCP3Q96CW5 907 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 RNF31Q96EP0 1072 aa5.33□□□□□ -1.56
VPS35-205ENST00000563984 MARS2Q96GW9 593 aaKnown RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms