RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 BCAT2O15382 392 aaPredicted RBP17.35■□□□□ 0.37
CLK3-210ENST00000563112 ADCY5O95622 1261 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 SEMA4FO95754 770 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 ACSL1P33121 698 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 CENPCQ03188 943 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 LRRC31Q6UY01 552 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 TRIM72Q6ZMU5 477 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 USP30Q70CQ3 517 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 SNX19Q92543 992 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 TBCBQ99426 244 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 PABPC3Q9H361 631 aaKnown RBP17.35■□□□□ 0.37
CLK3-210ENST00000563112 EIF2B4Q9UI10 523 aaKnown RBP17.35■□□□□ 0.37
CLK3-210ENST00000563112 SLC25A13Q9UJS0 675 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 NOCTQ9UK39 431 aaKnown RBP17.35■□□□□ 0.37
CLK3-210ENST00000563112 SIK3Q9Y2K2 1263 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 CHD8Q9HCK8 2581 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 ITIH6Q6UXX5 1313 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 CEP295Q9C0D2 2601 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 LRRC10BA6NIK2 292 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 ZNF18P17022 549 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 MZF1P28698 734 aaPredicted RBP17.34■□□□□ 0.37
CLK3-210ENST00000563112 CDH4P55283 916 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 JAM2P57087 298 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 NUMA1Q14980 2115 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 CST6Q15828 149 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 C5orf22Q49AR2 442 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 C2CD6Q53TS8 623 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 C9orf64Q5T6V5 341 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 OTUD1Q5VV17 481 aaPredicted RBP17.34■□□□□ 0.37
CLK3-210ENST00000563112 CXorf57Q6NSI4 855 aaKnown RBP17.34■□□□□ 0.37
CLK3-210ENST00000563112 ARCQ7LC44 396 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 C14orf80Q86SX3 495 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 DEFB124Q8NES8 71 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 SLC20A1Q8WUM9 679 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 OMDQ99983 421 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 C6orf106Q9H6K1 298 aaPredicted RBP17.34■□□□□ 0.37
CLK3-210ENST00000563112 FBXL12Q9NXK8 326 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 VPS28Q9UK41 221 aa17.34■□□□□ 0.37
CLK3-210ENST00000563112 UPK3BL1B0FP48 263 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 UPK3BL2E5RIL1 263 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 EPHB6O15197 1021 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 FSBPO95073 299 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 CYP1A1P04798 512 aaPredicted RBP17.33■□□□□ 0.36
CLK3-210ENST00000563112 TFE3P19532 575 aaPredicted RBP17.33■□□□□ 0.36
CLK3-210ENST00000563112 SLC8A1P32418 973 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 FLT3P36888 993 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 GGCXP38435 758 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 STK19P49842 368 aaPredicted RBP17.33■□□□□ 0.36
CLK3-210ENST00000563112 FMO1Q01740 532 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 TYRO3Q06418 890 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 ZNF252P-AS1Q0IIN9 211 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 SEMA3BQ13214 749 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 MMAAQ8IVH4 418 aaKnown RBP17.33■□□□□ 0.36
CLK3-210ENST00000563112 C1orf74Q96LT6 269 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 FEM1AQ9BSK4 669 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 MUC3BQ9H195 1237 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 DNAAF2Q9NVR5 837 aaKnown RBP17.33■□□□□ 0.36
CLK3-210ENST00000563112 TMEM59LQ9UK28 342 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 ANGPTL2Q9UKU9 493 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.33■□□□□ 0.36
CLK3-210ENST00000563112 PCDH15Q96QU1 1955 aa17.33■□□□□ 0.36
CLK3-210ENST00000563112 GIPC1O14908 333 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 MID1O15344 667 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 ADH1BP00325 375 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 RHOCP08134 193 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 CHRNB2P17787 502 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 MMP8P22894 467 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 RDXP35241 583 aaKnown RBP17.32■□□□□ 0.36
CLK3-210ENST00000563112 NSFP46459 744 aaKnown RBP17.32■□□□□ 0.36
CLK3-210ENST00000563112 VASPP50552 380 aaPredicted RBP17.32■□□□□ 0.36
CLK3-210ENST00000563112 KRT83P78385 493 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 GRIK2Q13002 908 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 SLC14A1Q13336 389 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 ELAVL3Q14576 367 aaKnown RBP17.32■□□□□ 0.36
CLK3-210ENST00000563112 TEAD4Q15561 434 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 ACCSLQ4AC99 568 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 IL27RAQ6UWB1 636 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 DSG4Q86SJ6 1040 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 STK40Q8N2I9 435 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 AOPEPQ8N6M6 819 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 PTPRN2Q92932 1015 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 CFAP57Q96MR6 1250 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 ERGIC2Q96RQ1 377 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 ADAM33Q9BZ11 813 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 METTL5Q9NRN9 209 aaKnown RBP17.32■□□□□ 0.36
CLK3-210ENST00000563112 FZD4Q9ULV1 537 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 TBC1D30Q9Y2I9 924 aa17.32■□□□□ 0.36
CLK3-210ENST00000563112 A0A1W2PP55 124 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 FAM47DPA6NHR8 397 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 LRRC72A6NJI9 287 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 RNASEH2AO75792 299 aaKnown RBP17.31■□□□□ 0.36
CLK3-210ENST00000563112 CNTN5O94779 1100 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 IL1BP01584 269 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 CCDC172P0C7W6 258 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 C5AR1P21730 350 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 PMLP29590 882 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 SDC4P31431 198 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 PSMD8P48556 350 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 NUMBP49757 651 aa17.31■□□□□ 0.36
CLK3-210ENST00000563112 IRAK1P51617 712 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms