RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 F5H5T6 163 aa17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 PDGFRAP16234 1089 aa17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 MZF1P28698 734 aaPredicted RBP17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 METAP1P53582 386 aa17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 SFSWAPQ12872 951 aaKnown RBP17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 BECN1Q14457 450 aa17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 SHBQ15464 509 aa17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 RNF219Q5W0B1 726 aaPredicted RBP17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 CXorf57Q6NSI4 855 aaKnown RBP17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 C19orf48Q6RUI8 117 aa17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 GATAD2AQ86YP4 633 aa17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 CPXM1Q96SM3 734 aa17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 CRACR2AQ9BSW2 395 aa17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 COL5A1P20908 1838 aaPredicted RBP17.23■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 A0A1W2PR77 199 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 FAM149AA5PLN7 773 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 DFNA5O60443 496 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 ADH1BP00325 375 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 IL1BP01584 269 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 GOT1P17174 413 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 SLC9A1P19634 815 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 C5AR1P21730 350 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 DRD3P35462 400 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 CCR5P51681 352 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 PPP2CBP62714 309 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 PPP2CAP67775 309 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 CENPCQ03188 943 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 CAMK2BQ13554 666 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 SLC12A1Q13621 1099 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 COL9A2Q14055 689 aaPredicted RBP17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 ELAVL3Q14576 367 aaKnown RBP17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 SMAD1Q15797 465 aaKnown RBP17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 SND1Q7KZF4 910 aaKnown RBP eCLIP17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 ENOSF1Q7L5Y1 443 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 DEFB106AQ8N104 65 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 GALNT15Q8N3T1 639 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 ATP6V0D2Q8N8Y2 350 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 OR14C36Q8NHC7 312 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 SLC2A13Q96QE2 648 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 ELF4Q99607 663 aaPredicted RBP17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 FAM204AQ9H8W3 233 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 RAXQ9Y2V3 346 aa17.22■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 CACNA1GO43497 2377 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 SYNJ2BP-COX16A0A087WUM0 186 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 A0A1B0GVM2 712 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 TCAF2A6NFQ2 919 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 CD38P28907 300 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 IRAK1P51617 712 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 PLK1P53350 603 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 ARHGAP44Q17R89 818 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 INAVAQ3KP66 663 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 CCDC157Q569K6 752 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 TTC39BQ5VTQ0 682 aaPredicted RBP17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 FBXL22Q6P050 247 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 DHRS13Q6UX07 377 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 PASD1Q8IV76 773 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 OR52K2Q8NGK3 314 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 FRS2Q8WU20 508 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 FAM131CQ96AQ9 280 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 ALG14Q96F25 216 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 AASDHPPTQ9NRN7 309 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 DDIT4Q9NX09 232 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 COX16Q9P0S2 106 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 DKK4Q9UBT3 224 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 APEX2Q9UBZ4 518 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 FTSJ1Q9UET6 329 aa17.21■□□□□ 0.35
VPS9D1-AS1-201ENST00000562298 BPTFQ12830 3046 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TRABD2BA6NFA1 517 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 CBX4O00257 560 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 PLK4O00444 970 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 LATO43561 262 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 GRAP2O75791 330 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 GLI1P08151 1106 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 ABCB4P21439 1286 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 CCR1P32246 355 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 USP8P40818 1118 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 CDK17Q00537 523 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 COL28A1Q2UY09 1125 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 RABGAP1LQ5R372 815 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 FAM183BPQ6ZVS7 135 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SAP25Q8TEE9 199 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SHC3Q92529 594 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SKA1Q96BD8 255 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SERAC1Q96JX3 654 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 PPP1R13BQ96KQ4 1090 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SPAG5Q96R06 1193 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 ASNSD1Q9NWL6 643 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 ARHGAP20Q9P2F6 1191 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SLC12A6Q9UHW9 1150 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 AJAP1Q9UKB5 411 aaPredicted RBP17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SARDHQ9UL12 918 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 PCDHGC3Q9UN70 934 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 KNL1Q8NG31 2342 aa17.2■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TBC1D3DA0A087WVF3 549 aa17.19■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TBC1D3IA0A087WXS9 549 aa17.19■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TBC1D3EA0A087X179 549 aa17.19■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TBC1D3KA0A087X1G2 549 aa17.19■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TBC1D3FA6NER0 549 aaPredicted RBP17.19■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TBC1D3LB9A6J9 549 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms