RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 KCNK18Q7Z418 384 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ZNF804AQ7Z570 1209 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SLFN11Q7Z7L1 901 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SLC41A1Q8IVJ1 513 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 MYOCDQ8IZQ8 938 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 RASGEF1CQ8N431 466 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 FITM2Q8N6M3 262 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 LRRC57Q8N9N7 239 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ZNF610Q8N9Z0 462 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 PRPF38AQ8NAV1 312 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 USP38Q8NB14 1042 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SLC44A5Q8NCS7 719 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 C3orf20Q8ND61 904 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 RASSF8Q8NHQ8 419 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SLC30A5Q8TAD4 765 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ACTRT1Q8TDG2 376 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 HDAC7Q8WUI4 952 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 CASKIN2Q8WXE0 1202 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 CRYGNQ8WXF5 182 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 KAT2BQ92831 832 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 DYNLL2Q96FJ2 89 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ATP6V1G3Q96LB4 118 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 MBOAT7Q96N66 472 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 CLUHP3Q96NS8 147 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ZIM3Q96PE6 472 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 RUFY1Q96T51 708 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 UHRF1Q96T88 793 aaPredicted RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 NAP1L4Q99733 375 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 TSG101Q99816 390 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 MXD3Q9BW11 206 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 CAPS2Q9BXY5 557 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 RAB34Q9BZG1 259 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 LRRC27Q9C0I9 530 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SPRTNQ9H040 489 aaPredicted RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 NT5C3AQ9H0P0 336 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 KCTD10Q9H3F6 313 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ZNF287Q9HBT7 754 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 KCNMB3Q9NPA1 279 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 PLCB1Q9NQ66 1216 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 A1CFQ9NQ94 594 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 FAM207AQ9NSI2 230 aaPredicted RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 RBM12Q9NTZ6 932 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 MCM9Q9NXL9 1143 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SMARCAL1Q9NZC9 954 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 EHD2Q9NZN4 543 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 AIPL1Q9NZN9 384 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SEC63Q9UGP8 760 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 NARFQ9UHQ1 456 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SLC12A6Q9UHW9 1150 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 FBXL5Q9UKA1 691 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 INTUQ9ULD6 942 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ATP6V0A2Q9Y487 856 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 COL4A3BPQ9Y5P4 624 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 CDY2AQ9Y6F7 541 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 FAM169AQ9Y6X4 670 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 KIAA1217Q5T5P2 1943 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SCN4AP35499 1836 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 UBE4BO95155 1302 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 FRMPD4Q14CM0 1322 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 LCTP09848 1927 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ZMYM2Q9UBW7 1377 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ZSWIM8A7E2V4 1837 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 MYH9P35579 1960 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 A0A087X0T9 212 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SMCO2A6NFE2 343 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ZSCAN5CA6NGD5 496 aaPredicted RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 VGLL3A8MV65 326 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 H0YGN5 161 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CCDC188H7C350 402 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 PGRMC1O00264 195 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 SLC16A3O15427 465 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 RAD51CO43502 376 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CCNT1O60563 726 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 PALMO75781 387 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ERLIN2O94905 339 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 BAG3O95817 575 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 FAM107AO95990 144 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 HNRNPCP07910 306 aaKnown RBP eCLIP2.64□□□□□ -1.99
SPG11-223ENST00000560858 FAM228BP0C875 321 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 IL1R1P14778 569 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CYP11B2P19099 503 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TECP42680 631 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 BTDP43251 543 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CARSP49589 748 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 HADHBP55084 474 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 RPS7P62081 194 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 PHC1P78364 1004 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 GFPT1Q06210 699 aaPredicted RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 DDR1Q08345 913 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ZNF543Q08ER8 600 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 PDCLQ13371 301 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 BIRC3Q13489 604 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 GRAPQ13588 217 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CUL1Q13616 776 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TRIM25Q14258 630 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 TRIP6Q15654 476 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 UAP1Q16222 522 aaPredicted RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 ASIC2Q16515 512 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 PTGISQ16647 500 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 NFIL3Q16649 462 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms