RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ILVBLA1L0T0 632 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 WASH4PA8MWX3 477 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 CNTN5O94779 1100 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 EPHB2P29323 1055 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 OR1E1P30953 314 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 ST8SIA6P61647 398 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 SLC25A11Q02978 314 aaKnown RBP13.36□□□□□ -0.27
NEDD8-208ENST00000560427 STARD3Q14849 445 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 DPYSL2Q16555 572 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 RNF219Q5W0B1 726 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-208ENST00000560427 RWDD4Q6NW29 188 aaKnown RBP13.36□□□□□ -0.27
NEDD8-208ENST00000560427 SERPINA13PQ6UXR4 307 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 CYP4V2Q6ZWL3 525 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-208ENST00000560427 NLRP14Q86W24 1093 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 LONP2Q86WA8 852 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 RASSF3Q86WH2 238 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 TMEM139Q8IV31 216 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 CCDC33Q8N5R6 958 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 RTL3Q8N8U3 475 aaKnown RBP13.36□□□□□ -0.27
NEDD8-208ENST00000560427 DCAF4L2Q8NA75 395 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 CCDC112Q8NEF3 446 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 SLC35G2Q8TBE7 412 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 PEBP4Q96S96 227 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 FEM1AQ9BSK4 669 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 C2orf49Q9BVC5 232 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-208ENST00000560427 FBRSQ9HAH7 460 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 OSGEPQ9NPF4 335 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 MPP6Q9NZW5 540 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 PCSK1NQ9UHG2 260 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 PCDHA13Q9Y5I0 950 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 OR51B4Q9Y5P0 310 aa13.36□□□□□ -0.27
NEDD8-208ENST00000560427 MUC22E2RYF6 1773 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-208ENST00000560427 CACNA1HO95180 2353 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 A0A1W2PQF6 199 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 FAM72CH0Y354 149 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 ZBTB24O43167 697 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-208ENST00000560427 KRT7P08729 469 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 CNR2P34972 360 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 NNMTP40261 264 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 IL12RB1P42701 662 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 SLC1A1P43005 524 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 HCAR3P49019 387 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 MRE11P49959 708 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 TPI1P60174 286 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 KRT83P78385 493 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 ECT2LQ008S8 904 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 PTPRNQ16849 979 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 FAM72AQ5TYM5 149 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 FAM72DQ6L9T8 149 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 RAD9BQ6WBX8 426 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 POLNQ7Z5Q5 900 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 TFAP2DQ7Z6R9 452 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 WDR5BQ86VZ2 330 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 FAM72BQ86X60 149 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 ZBTB44Q8NCP5 570 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 ALG14Q96F25 216 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 BTBD6Q96KE9 485 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 HHIPQ96QV1 700 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 ACOX2Q99424 681 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 MUC3BQ9H195 1237 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 TMEM245Q9H330 911 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 DHX35Q9H5Z1 703 aaKnown RBP13.35□□□□□ -0.27
NEDD8-208ENST00000560427 ZWILCHQ9H900 591 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 C2orf42Q9NWW7 574 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 CACNA2D2Q9NY47 1150 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 RCOR3Q9P2K3 495 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-208ENST00000560427 VPS28Q9UK41 221 aa13.35□□□□□ -0.27
NEDD8-208ENST00000560427 BTNL10A8MVZ5 291 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 H0Y858 1186 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 H3BRJ5 948 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 EEF2KO00418 725 aaKnown RBP13.34□□□□□ -0.27
NEDD8-208ENST00000560427 CREB3O43889 395 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 SYNCRIPO60506 623 aaKnown RBP13.34□□□□□ -0.27
NEDD8-208ENST00000560427 RAMP2O60895 175 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 IL1R2P27930 398 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 MZF1P28698 734 aaPredicted RBP13.34□□□□□ -0.27
NEDD8-208ENST00000560427 YBEYP58557 167 aaPredicted RBP13.34□□□□□ -0.27
NEDD8-208ENST00000560427 GNA12Q03113 381 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 FNDC3BQ53EP0 1204 aaKnown RBP13.34□□□□□ -0.27
NEDD8-208ENST00000560427 TSSK4Q6SA08 328 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 TMEM92Q6UXU6 159 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 RFX8Q6ZV50 586 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 APCDD1Q8J025 514 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 PYROXD2Q8N2H3 581 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 CYB5D2Q8WUJ1 264 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 ATRIPQ8WXE1 791 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 SORCS1Q8WY21 1168 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 MRGPRX3Q96LB0 322 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 MAGEH1Q9H213 219 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 SEMA4AQ9H3S1 761 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 CD248Q9HCU0 757 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.34□□□□□ -0.27
NEDD8-208ENST00000560427 SUN2Q9UH99 717 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 SLC25A13Q9UJS0 675 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 ERVW-1Q9UQF0 538 aa13.34□□□□□ -0.27
NEDD8-208ENST00000560427 TCRBV21S2A2A0A5A6 115 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 ANTXRLA6NF34 631 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 AXIN1O15169 862 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 NRDCO43847 1150 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 LILRB5O75023 590 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms