RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 PHLDB2Q86SQ0 1253 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 METTL3Q86U44 580 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 CIR1Q86X95 450 aaPredicted RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 SYT12Q8IV01 421 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 TMEFF1Q8IYR6 380 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 RGL4Q8IZJ4 473 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 MCOLN2Q8IZK6 566 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 EMC1Q8N766 993 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CADM4Q8NFZ8 388 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 OR2T3Q8NH03 318 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 OLIG1Q8TAK6 271 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CEP76Q8TAP6 659 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 NETO1Q8TDF5 533 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 GANCQ8TET4 914 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 FAM172AQ8WUF8 416 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CPLX3Q8WVH0 158 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 RXFP2Q8WXD0 754 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 BAP1Q92560 729 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 TTC17Q96AE7 1141 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ERLEC1Q96DZ1 483 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 P2RY11Q96G91 374 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CCDC114Q96M63 670 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 MCEEQ96PE7 176 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 PCDHB18PQ96TA0 734 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 PRMT1Q99873 361 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 NCAPGQ9BPX3 1015 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 FEM1AQ9BSK4 669 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CNPY3Q9BT09 278 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ANP32EQ9BTT0 268 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 NUSAP1Q9BXS6 441 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 ZYG11BQ9C0D3 744 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 MKRN2Q9H000 416 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 DUSP15Q9H1R2 295 aaPredicted RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 ARRDC1-AS1Q9H2J1 176 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 DEF6Q9H4E7 631 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ITM2CQ9NQX7 267 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 IFNKQ9P0W0 207 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 PPARGC1AQ9UBK2 798 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 SUSD2Q9UGT4 822 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ADAMTS1Q9UHI8 967 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 SLC25A13Q9UJS0 675 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 HCN2Q9UL51 889 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 HPCAL4Q9UM19 191 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CAPN11Q9UMQ6 739 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CYP8B1Q9UNU6 501 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 TBC1D30Q9Y2I9 924 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 SCINQ9Y6U3 715 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 PATJQ8NI35 1801 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CFAP54Q96N23 3096 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 HELZP42694 1942 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 KIF26AQ9ULI4 1882 aaPredicted RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 MYO16Q9Y6X6 1858 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 ITIH6Q6UXX5 1313 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 OTOGLQ3ZCN5 2332 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 IGLV3-10A0A075B6K4 115 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 IGHV1OR15-9A0A0B4J2B8 117 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 DRGXA6NNA5 263 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 MEI4A8MW99 385 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 EIF3CLB5ME19 914 aaKnown RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 CBX4O00257 560 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 RTN2O75298 545 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 RNASEH2AO75792 299 aaKnown RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 EPN2O95208 641 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 ADH1BP00325 375 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 IL1BP01584 269 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 PLEKP08567 350 aaPredicted RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 HLA-EP13747 358 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 RHOQP17081 205 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 TFE3P19532 575 aaPredicted RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 BCKDHBP21953 392 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 PSMA2P25787 234 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 MZF1P28698 734 aaPredicted RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 EPHB2P29323 1055 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 HOXC13P31276 330 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 GGCXP38435 758 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 PRKCIP41743 596 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 PTGER3P43115 390 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 RECQLP46063 649 aaPredicted RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 COPAP53621 1224 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 ATXN1P54253 815 aaKnown RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 HDAC4P56524 1084 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 GEMIN4P57678 1058 aaKnown RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 RPL7AP62424 266 aaKnown RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 FOXK2Q01167 660 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 GFPT1Q06210 699 aaPredicted RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 SLC20A2Q08357 652 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 PTP4A2Q12974 167 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 MAMLD1Q13495 774 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 PUM1Q14671 1186 aaKnown RBP eCLIP4.49□□□□□ -1.69
SNX1-205ENST00000559339 ACAP1Q15027 740 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 PTPRNQ16849 979 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 DUOXA1Q1HG43 343 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 C15orf59Q2T9L4 293 aaPredicted RBP4.49□□□□□ -1.69
SNX1-205ENST00000559339 MAP7D1Q3KQU3 841 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 C5orf22Q49AR2 442 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 ALFQ53S48 1182 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 TRIM61Q5EBN2 209 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 PLA2G2CQ5R387 149 aa4.49□□□□□ -1.69
SNX1-205ENST00000559339 FAM46CQ5VWP2 391 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms