RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 PLIN1O60240 522 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 DUSP11O75319 330 aaKnown RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 URI1O94763 535 aaPredicted RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 BAIAP3O94812 1187 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 IGKV5-2P06315 115 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 ELFN1P0C7U0 828 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 CYP2C9P11712 490 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 AOC1P19801 751 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 WDR5P61964 334 aaKnown RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 RPS16P62249 146 aaKnown RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 DEFB103AP81534 67 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 UBE4AQ14139 1066 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 FAM153CQ494X1 144 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 N4BP2L1Q5TBK1 243 aaPredicted RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 ICE2Q659A1 982 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 GAS2L3Q86XJ1 694 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 BOLLQ8N9W6 283 aaKnown RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 SMRP1Q8NCR6 262 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 MOV10L1Q9BXT6 1211 aaKnown RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 UPF3AQ9H1J1 476 aaKnown RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 DDX4Q9NQI0 724 aaKnown RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 BABAM1Q9NWV8 329 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 GEMIN8Q9NWZ8 242 aaKnown RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 EHD3Q9NZN3 535 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 AFF4Q9UHB7 1163 aaKnown RBP6.67□□□□□ -1.34
RTF1-204ENST00000558117 SHOC2Q9UQ13 582 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 KALRNO60229 2985 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 KIF16BQ96L93 1317 aa6.67□□□□□ -1.34
RTF1-204ENST00000558117 SIP14410 1827 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 CFAP46Q8IYW2 2715 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 ANKRD18BA2A2Z9 1011 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 PYCARD-AS1I3L0S3 204 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 APAF1O14727 1248 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 NXPH3O95157 252 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 TTLL1O95922 423 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 XRCC6P12956 609 aaKnown RBP eCLIP6.66□□□□□ -1.34
RTF1-204ENST00000558117 RFC2P35250 354 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 MYO1EQ12965 1108 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 EIF2B5Q13144 721 aaKnown RBP6.66□□□□□ -1.34
RTF1-204ENST00000558117 GPM6BQ13491 265 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 EPC2Q52LR7 807 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 PLA1AQ53H76 456 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 PLAC9Q5JTB6 97 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 RGS7BPQ6MZT1 257 aaPredicted RBP6.66□□□□□ -1.34
RTF1-204ENST00000558117 FBXO42Q6P3S6 717 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 PRIMA1Q86XR5 153 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 SMC5Q8IY18 1101 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 UBALD2Q8IYN6 164 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 ABRAQ8N0Z2 381 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 ATRIPQ8WXE1 791 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 BBC3Q96PG8 261 aaPredicted RBP6.66□□□□□ -1.34
RTF1-204ENST00000558117 NUP62CLQ9H1M0 184 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 CXorf36Q9H7Y0 433 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 A1CFQ9NQ94 594 aaKnown RBP6.66□□□□□ -1.34
RTF1-204ENST00000558117 PTGFRNQ9P2B2 879 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 SALL1Q9NSC2 1324 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 AKAP13Q12802 2813 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 PTPRSQ13332 1948 aa6.66□□□□□ -1.34
RTF1-204ENST00000558117 UBR5O95071 2799 aaPredicted RBP6.65□□□□□ -1.34
RTF1-204ENST00000558117 CDK5RAP2Q96SN8 1893 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 F8W8V4 182 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 GCOM1H8Y6P7 765 aaPredicted RBP6.65□□□□□ -1.34
RTF1-204ENST00000558117 NR2F6P10588 404 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 TRIM27P14373 513 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 PPIFP30405 207 aaKnown RBP6.65□□□□□ -1.34
RTF1-204ENST00000558117 LRPAP1P30533 357 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 PIK3CBP42338 1070 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 PTH2RP49190 550 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 DGKEP52429 567 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 KRT17Q04695 432 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 COASYQ13057 564 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 ITGA7Q13683 1181 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 TBCCQ15814 346 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 SLC44A4Q53GD3 710 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 TSTD2Q5T7W7 516 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 KSR2Q6VAB6 950 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 CATSPERGQ6ZRH7 1159 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 TICAM2Q86XR7 235 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 UBE2Q2Q8WVN8 375 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 PMM1Q92871 262 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 PHKBQ93100 1093 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 RFKQ969G6 155 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 UROC1Q96N76 676 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 FTOQ9C0B1 505 aaKnown RBP eCLIP6.65□□□□□ -1.34
RTF1-204ENST00000558117 PAXBP1Q9Y5B6 917 aa6.65□□□□□ -1.34
RTF1-204ENST00000558117 TET1Q8NFU7 2136 aa6.65□□□□□ -1.35
RTF1-204ENST00000558117 ITPR3Q14573 2671 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 MYH3P11055 1940 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 SCN5AQ14524 2016 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 LINC00473A8K010 186 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 IQCF3P0C7M6 154 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 ZFXP17010 805 aaPredicted RBP6.64□□□□□ -1.35
RTF1-204ENST00000558117 ATF7P17544 494 aaPredicted RBP6.64□□□□□ -1.35
RTF1-204ENST00000558117 BMPR2Q13873 1038 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 E2F2Q14209 437 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 SAFBQ15424 915 aaKnown RBP eCLIP6.64□□□□□ -1.35
RTF1-204ENST00000558117 MGAT5BQ3V5L5 792 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 ZNF618Q5T7W0 954 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 DPY19L2P1Q6NXN4 242 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 CXCL17Q6UXB2 119 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms