RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 ACSL3O95573 720 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 OXSR1O95747 527 aaPredicted RBP5.22□□□□□ -1.57
TMEM260-210ENST00000556422 HMGCRP04035 888 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 GDI1P31150 447 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 SLCO1A2P46721 670 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 CDKN1CP49918 316 aaPredicted RBP5.22□□□□□ -1.57
TMEM260-210ENST00000556422 ST13P50502 369 aaKnown RBP5.22□□□□□ -1.57
TMEM260-210ENST00000556422 COPS2P61201 443 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 PLD1Q13393 1074 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 COTL1Q14019 142 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 CNGA2Q16280 664 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 CCL14Q16627 93 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 MINDY4Q4G0A6 757 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 MFSD5Q6N075 450 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 AKAP14Q86UN6 197 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 ALLCQ8N6M5 410 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 ZNF540Q8NDQ6 660 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 SLC35B2Q8TB61 432 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 UBA3Q8TBC4 463 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 TRPC4APQ8TEL6 797 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 HSPH1Q92598 858 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 TRIM63Q969Q1 353 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 ZNF566Q969W8 418 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 FAM149B1Q96BN6 582 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 PPP1R36Q96LQ0 422 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 NSMCE3Q96MG7 304 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 SAMD11Q96NU1 681 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 MRPL45Q9BRJ2 306 aaKnown RBP5.22□□□□□ -1.57
TMEM260-210ENST00000556422 FAM49AQ9H0Q0 323 aaPredicted RBP5.22□□□□□ -1.57
TMEM260-210ENST00000556422 SMYD2Q9NRG4 433 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 MOCS1Q9NZB8 636 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 TEKT2Q9UIF3 430 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 TSPAN16Q9UKR8 245 aa5.22□□□□□ -1.57
TMEM260-210ENST00000556422 IQANK1A0A1B0GTG1 560 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 SLC15A5A6NIM6 579 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 A6NJY4 79 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 A6NNZ2 444 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 E5RJQ4 531 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 H3BUI4 141 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 UBXN8O00124 270 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 HAS3O00219 553 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 CACNB4O00305 520 aaPredicted RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 PIK3R2O00459 728 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 SCAMP3O14828 347 aaKnown RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 TTC4O95801 387 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 MT-ND3P03897 115 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 ENO2P09104 434 aaPredicted RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 LINGO3P0C6S8 592 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 ATF2P15336 505 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 PSMA2P25787 234 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 ACADSBP45954 432 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 GDF10P55107 478 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 BEX3Q00994 111 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 RELQ04864 619 aaPredicted RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 MOGQ16653 247 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 WSCD2Q2TBF2 565 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 TUBB8Q3ZCM7 444 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 GLRA4Q5JXX5 417 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 PPP1R26Q5T8A7 1209 aaPredicted RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 ELMSAN1Q6PJG2 1045 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 LCLAT1Q6UWP7 414 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 TRMT10CQ7L0Y3 403 aaKnown RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 CPLX4Q7Z7G2 160 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 ZNF565Q8N9K5 539 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 DDHD1Q8NEL9 900 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 ATXN2LQ8WWM7 1075 aaKnown RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 KHSRPQ92945 711 aaKnown RBP eCLIP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 NKD2Q969F2 451 aaPredicted RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 PMEPA1Q969W9 287 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 C18orf25Q96B23 403 aaPredicted RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 KIF12Q96FN5 646 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 CMTM3Q96MX0 182 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 FRMD6Q96NE9 622 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 SERINC2Q96SA4 455 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 TMEM121Q9BTD3 319 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 ADAM33Q9BZ11 813 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 C8orf33Q9H7E9 229 aaPredicted RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 UCKL1Q9NWZ5 548 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 NINJ2Q9NZG7 142 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 NOP53Q9NZM5 478 aaKnown RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 CTNNAL1Q9UBT7 734 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 TRPS1Q9UHF7 1281 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 GINS2Q9Y248 185 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 PCDHGB7Q9Y5F8 929 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 NRCAMQ92823 1304 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 GOLGA8OA6NCC3 632 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 SMIM23A6NLE4 172 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 SRRM3A6NNA2 597 aaPredicted RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 FOXO6A8MYZ6 492 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 GOLGA8NF8WBI6 632 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 DYNC1LI2O43237 492 aaPredicted RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 RNGTTO60942 597 aaKnown RBP5.21□□□□□ -1.58
TMEM260-210ENST00000556422 ENDOD1O94919 500 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 TJP3O95049 919 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 CREB1P16220 341 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 VAMP1P23763 118 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 MIPP30301 263 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 HOXC8P31273 242 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 CTHP32929 405 aa5.21□□□□□ -1.58
TMEM260-210ENST00000556422 VCPP55072 806 aaKnown RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms