RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 OR7D4Q8NG98 312 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 TRIM11Q96F44 468 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 RPL10LQ96L21 214 aaKnown RBP12.71□□□□□ -0.37
SYNE2-214ENST00000554928 FAM126AQ9BYI3 521 aaPredicted RBP12.71□□□□□ -0.37
SYNE2-214ENST00000554928 MKRN2Q9H000 416 aaKnown RBP12.71□□□□□ -0.37
SYNE2-214ENST00000554928 IRF2BPLQ9H1B7 796 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 OSBPL2Q9H1P3 480 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 TMEM245Q9H330 911 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 KIAA1522Q9P206 1035 aaPredicted RBP12.71□□□□□ -0.37
SYNE2-214ENST00000554928 OR12D3Q9UGF7 316 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 EBF1Q9UH73 591 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 SLCO3A1Q9UIG8 710 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 TFR2Q9UP52 801 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 ERVW-1Q9UQF0 538 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 TBC1D30Q9Y2I9 924 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 PAXBP1Q9Y5B6 917 aa12.71□□□□□ -0.37
SYNE2-214ENST00000554928 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 ANKRD62A6NC57 917 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 TTC34A8MYJ7 566 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 AKR1B10O60218 316 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 CLDN11O75508 207 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 EPHX1P07099 455 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 TPM1P09493 284 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 VAV1P15498 845 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 MRE11P49959 708 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 COPAP53621 1224 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 NRG1Q02297 640 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 SEMA3BQ13214 749 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 ZNF177Q13360 481 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 RWDD4Q6NW29 188 aaKnown RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 SERPINA13PQ6UXR4 307 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 LRRC31Q6UY01 552 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 ALYREFQ86V81 257 aaKnown RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 KBTBD6Q86V97 674 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 FNIP1Q8TF40 1166 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 UCMAQ8WVF2 138 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 NKD2Q969F2 451 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 KCTD15Q96SI1 283 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 FEM1AQ9BSK4 669 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 SNRNP25Q9BV90 132 aaKnown RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 ZYG11BQ9C0D3 744 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 EPC1Q9H2F5 836 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 DEF6Q9H4E7 631 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 POLMQ9NP87 494 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 ZNHIT6Q9NWK9 470 aaKnown RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 MBD1Q9UIS9 605 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-214ENST00000554928 ACTL7AQ9Y615 435 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 SCINQ9Y6U3 715 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 FANCMQ8IYD8 2048 aa12.7□□□□□ -0.38
SYNE2-214ENST00000554928 TIMM44O43615 452 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 MT-CO1P00395 513 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 RHOCP08134 193 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 ACVRL1P37023 503 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 PLK1P53350 603 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 NRLP54845 237 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 MTA1Q13330 715 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 MAP7D1Q3KQU3 841 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 ARL13BQ3SXY8 428 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 KCNT1Q5JUK3 1230 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 SDE2Q6IQ49 451 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 PRR23BQ6ZRT6 265 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 PGBD3Q8N328 593 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 DCLK2Q8N568 766 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 SPC24Q8NBT2 197 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 NETO2Q8NC67 525 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 ZNF564Q8TBZ8 553 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-214ENST00000554928 GAB3Q8WWW8 586 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 MRGPRX1Q96LB2 322 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 CCDC42Q96M95 316 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 NOL6Q9H6R4 1146 aaKnown RBP12.69□□□□□ -0.38
SYNE2-214ENST00000554928 MRPL47Q9HD33 250 aaKnown RBP12.69□□□□□ -0.38
SYNE2-214ENST00000554928 OSGEPQ9NPF4 335 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 PRSS16Q9NQE7 514 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 BCCIPQ9P287 314 aaKnown RBP eCLIP12.69□□□□□ -0.38
SYNE2-214ENST00000554928 PPARGC1AQ9UBK2 798 aaKnown RBP12.69□□□□□ -0.38
SYNE2-214ENST00000554928 DNAI1Q9UI46 699 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 ANAPC7Q9UJX3 599 aa12.69□□□□□ -0.38
SYNE2-214ENST00000554928 SMG5Q9UPR3 1016 aaKnown RBP12.69□□□□□ -0.38
SYNE2-214ENST00000554928 ZFHX2Q9C0A1 2572 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 CCDC163A0A0D9SF12 145 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 SOWAHDA6NJG2 315 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 K7ERQ8 282 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 CREB3O43889 395 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 GFRA3O60609 400 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 RPP40O75818 363 aaKnown RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 ATP5BP06576 529 aaKnown RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 H2AFZP0C0S5 128 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 TMEM253P0C7T8 217 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 OR1E1P30953 314 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 L1CAMP32004 1257 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 ECT2LQ008S8 904 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 CAMK2GQ13555 558 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 SIM2Q14190 667 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 TSR1Q2NL82 804 aaKnown RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 SMTNL2Q2TAL5 461 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 EFHC2Q5JST6 749 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 ZC3H14Q6PJT7 736 aaKnown RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 KIAA1324Q6UXG2 1013 aaKnown RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 LINGO4Q6UY18 593 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 H2AFVQ71UI9 128 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms