RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 CDKN3Q16667 212 aa14.3□□□□□ -0.12
PRPF39-204ENST00000553605 RAB41Q5JT25 222 aa14.3□□□□□ -0.12
PRPF39-204ENST00000553605 EFL1Q7Z2Z2 1120 aaKnown RBP14.3□□□□□ -0.12
PRPF39-204ENST00000553605 PIGZQ86VD9 579 aa14.3□□□□□ -0.12
PRPF39-204ENST00000553605 RNF139Q8WU17 664 aa14.3□□□□□ -0.12
PRPF39-204ENST00000553605 CLIC6Q96NY7 704 aa14.3□□□□□ -0.12
PRPF39-204ENST00000553605 CALN1Q9BXU9 219 aa14.3□□□□□ -0.12
PRPF39-204ENST00000553605 UBXN6Q9BZV1 441 aa14.3□□□□□ -0.12
PRPF39-204ENST00000553605 FBXO2Q9UK22 296 aaPredicted RBP14.3□□□□□ -0.12
PRPF39-204ENST00000553605 SRPRBQ9Y5M8 271 aaKnown RBP14.3□□□□□ -0.12
PRPF39-204ENST00000553605 ITIH6Q6UXX5 1313 aa14.3□□□□□ -0.12
PRPF39-204ENST00000553605 TDRD6O60522 2096 aaKnown RBP14.3□□□□□ -0.12
PRPF39-204ENST00000553605 COL27A1Q8IZC6 1860 aaPredicted RBP14.29□□□□□ -0.12
PRPF39-204ENST00000553605 CCDC187A0A096LP49 1063 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 IRAK2O43187 625 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 TCEA3O75764 348 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 ZBED1O96006 694 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 ASS1P00966 412 aaKnown RBP14.29□□□□□ -0.12
PRPF39-204ENST00000553605 GJB2P29033 226 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 SLC6A4P31645 630 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 TKTL1P51854 596 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 METAP1P53582 386 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 FOXK1P85037 733 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 ECT2LQ008S8 904 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 ELAVL3Q14576 367 aaKnown RBP14.29□□□□□ -0.12
PRPF39-204ENST00000553605 IGFBP7Q16270 282 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 RNF219Q5W0B1 726 aaPredicted RBP14.29□□□□□ -0.12
PRPF39-204ENST00000553605 PM20D1Q6GTS8 502 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 ZCCHC8Q6NZY4 707 aaKnown RBP14.29□□□□□ -0.12
PRPF39-204ENST00000553605 GUSBP11Q6P575 273 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 C14orf80Q86SX3 495 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 FAM26EQ8N5C1 309 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 TMEM145Q8NBT3 493 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 NDRG1Q92597 394 aaKnown RBP14.29□□□□□ -0.12
PRPF39-204ENST00000553605 IFT43Q96FT9 208 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 MYOCQ99972 504 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 DNAI2Q9GZS0 605 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 GEMIN8Q9NWZ8 242 aaKnown RBP14.29□□□□□ -0.12
PRPF39-204ENST00000553605 CEP83Q9Y592 693 aa14.29□□□□□ -0.12
PRPF39-204ENST00000553605 USP9YO00507 2555 aaPredicted RBP14.29□□□□□ -0.12
PRPF39-204ENST00000553605 UTP20O75691 2785 aaKnown RBP14.29□□□□□ -0.12
PRPF39-204ENST00000553605 A0A087X0B3 334 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 BLACEA4D250 179 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 EME2A4GXA9 379 aaPredicted RBP14.28□□□□□ -0.12
PRPF39-204ENST00000553605 SLC31A1O15431 190 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 SLC5A2P31639 672 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 HNRNPKP61978 463 aaKnown RBP eCLIP14.28□□□□□ -0.12
PRPF39-204ENST00000553605 ZACNQ401N2 412 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 ZNF542PQ5EBM4 170 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 FSCBQ5H9T9 825 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 PITRM1Q5JRX3 1037 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 CRTC1Q6UUV9 634 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 MMS22LQ6ZRQ5 1243 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 BRAPQ7Z569 592 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 PTRH1Q86Y79 214 aaKnown RBP14.28□□□□□ -0.12
PRPF39-204ENST00000553605 C12orf56Q8IXR9 622 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 CARNMT1Q8N4J0 409 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 OR13H1Q8NG92 308 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 EDEM1Q92611 657 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 RPL10LQ96L21 214 aaKnown RBP14.28□□□□□ -0.12
PRPF39-204ENST00000553605 HEXIM2Q96MH2 286 aaKnown RBP14.28□□□□□ -0.12
PRPF39-204ENST00000553605 DOCK9Q9BZ29 2069 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 ULBP1Q9BZM6 244 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 EPN3Q9H201 632 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 CYP3A43Q9HB55 503 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 LRRC4CQ9HCJ2 640 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 NCKIPSDQ9NZQ3 722 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 CGNQ9P2M7 1197 aaKnown RBP14.28□□□□□ -0.12
PRPF39-204ENST00000553605 TFIP11Q9UBB9 837 aaKnown RBP14.28□□□□□ -0.12
PRPF39-204ENST00000553605 PCDHGA7Q9Y5G6 932 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 CLIC4Q9Y696 253 aa14.28□□□□□ -0.12
PRPF39-204ENST00000553605 KIF26BQ2KJY2 2108 aa14.27□□□□□ -0.12
PRPF39-204ENST00000553605 MSI1O43347 362 aaKnown RBP14.27□□□□□ -0.13
PRPF39-204ENST00000553605 EIF5BO60841 1220 aaKnown RBP14.27□□□□□ -0.13
PRPF39-204ENST00000553605 MOCS3O95396 460 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 PRLRP16471 622 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 CD58P19256 250 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 NNMTP40261 264 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 SLC11A2P49281 568 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 DLG4P78352 724 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 CNTN1Q12860 1018 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 CDH18Q13634 790 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 FAM133BQ5BKY9 247 aaKnown RBP14.27□□□□□ -0.13
PRPF39-204ENST00000553605 FAM26FQ5R3K3 315 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 BSPRYQ5W0U4 402 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 SV2AQ7L0J3 742 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 BHLHA9Q7RTU4 235 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 CCDC117Q8IWD4 279 aaPredicted RBP14.27□□□□□ -0.13
PRPF39-204ENST00000553605 ZSCAN1Q8NBB4 408 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 HJURPQ8NCD3 748 aaPredicted RBP14.27□□□□□ -0.13
PRPF39-204ENST00000553605 KLK6Q92876 244 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 SPAG5Q96R06 1193 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 LRRC27Q9C0I9 530 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 DNAJC28Q9NX36 388 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 SARDHQ9UL12 918 aa14.27□□□□□ -0.13
PRPF39-204ENST00000553605 TYW5A2RUC4 315 aaKnown RBP14.26□□□□□ -0.13
PRPF39-204ENST00000553605 RIOK3O14730 519 aaKnown RBP14.26□□□□□ -0.13
PRPF39-204ENST00000553605 PLD2O14939 933 aa14.26□□□□□ -0.13
PRPF39-204ENST00000553605 ACSL4O60488 711 aa14.26□□□□□ -0.13
PRPF39-204ENST00000553605 VAV1P15498 845 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms