RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ADAM22Q9P0K1 906 aa10.59□□□□□ -0.71
CCDC88C-206ENST00000553437 SUN2Q9UH99 717 aa10.59□□□□□ -0.71
CCDC88C-206ENST00000553437 SLCO3A1Q9UIG8 710 aa10.59□□□□□ -0.71
CCDC88C-206ENST00000553437 PILRBQ9UKJ0 227 aa10.59□□□□□ -0.71
CCDC88C-206ENST00000553437 CDV3Q9UKY7 258 aaKnown RBP10.59□□□□□ -0.71
CCDC88C-206ENST00000553437 TBC1D30Q9Y2I9 924 aa10.59□□□□□ -0.71
CCDC88C-206ENST00000553437 OR51B4Q9Y5P0 310 aa10.59□□□□□ -0.71
CCDC88C-206ENST00000553437 SDK1Q7Z5N4 2213 aa10.59□□□□□ -0.71
CCDC88C-206ENST00000553437 MAP1BP46821 2468 aaKnown RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 MYO18AQ92614 2054 aaKnown RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 EML5Q05BV3 1969 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 MED19A0JLT2 244 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 LRRC53A6NM62 1247 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 TTC34A8MYJ7 566 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 TM4SF5O14894 197 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 CLDN11O75508 207 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 MOCS3O95396 460 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 KRT3P12035 628 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 PTMSP20962 102 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 RFC1P35251 1148 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 PBX1P40424 430 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 PTPN9P43378 593 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 CDH4P55283 916 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 OXCT1P55809 520 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 RPS14P62263 151 aaKnown RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 IRX4P78413 519 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 ATP11AP98196 1134 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 ZNF177Q13360 481 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 C15orf59Q2T9L4 293 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 ZSCAN23Q3MJ62 389 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 ALFQ53S48 1182 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 C9orf64Q5T6V5 341 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 E4F1Q66K89 784 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 ACAD10Q6JQN1 1059 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 SND1Q7KZF4 910 aaKnown RBP eCLIP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 FAM131BQ86XD5 332 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 C12orf50Q8NA57 414 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 C3orf20Q8ND61 904 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 CENPIQ92674 756 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 TOE1Q96GM8 510 aaKnown RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 HAPLN3Q96S86 360 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 FEM1AQ9BSK4 669 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 RTKNQ9BST9 563 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 RSPH9Q9H1X1 276 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 FBRSQ9HAH7 460 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 TAS2R14Q9NYV8 317 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 AIPL1Q9NZN9 384 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 ZNF212Q9UDV6 495 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 EVLQ9UI08 416 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 PAXBP1Q9Y5B6 917 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 ITIH6Q6UXX5 1313 aa10.58□□□□□ -0.72
CCDC88C-206ENST00000553437 LNP1A1A4G5 178 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 TARSL2A2RTX5 802 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 SIGLEC16A6NMB1 481 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 E9PAM4 449 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 KHNYNO15037 678 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 SIN3BO75182 1162 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 SERPINC1P01008 464 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 CALB1P05937 261 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 CCDC172P0C7W6 258 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 OXTRP30559 389 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 SDC4P31431 198 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 ADRA1BP35368 520 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 NUMBP49757 651 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 STK19P49842 368 aaPredicted RBP10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 VASPP50552 380 aaPredicted RBP10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 ST8SIA6P61647 398 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 FANCCQ00597 558 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 ZBTB16Q05516 673 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 SULT2A1Q06520 285 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 FIGNQ5HY92 759 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 PPP1R15BQ5SWA1 713 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 ACBD5Q5T8D3 534 aaPredicted RBP10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 STPG1Q5TH74 334 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 WDR59Q6PJI9 974 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 STRADAQ7RTN6 431 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 DGLUCYQ7Z3D6 616 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 CACUL1Q86Y37 369 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 MCOLN2Q8IZK6 566 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 CADM4Q8NFZ8 388 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 RPL10LQ96L21 214 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 HSPA12BQ96MM6 686 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 PSMB7Q99436 277 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 NUP58Q9BVL2 599 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 GPR174Q9BXC1 333 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 MAGEB5Q9BZ81 275 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 EDEM3Q9BZQ6 932 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 SEPT11Q9NVA2 429 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 MPP6Q9NZW5 540 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 ABCA7Q8IZY2 2146 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 ATXN2Q99700 1313 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 SPTBN2O15020 2390 aa10.57□□□□□ -0.72
CCDC88C-206ENST00000553437 DCDC2BA2VCK2 349 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 CDX4O14627 284 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 ATP9BO43861 1147 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 NDUFS2O75306 463 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 ACADMP11310 421 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 VAV1P15498 845 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 TNFAIP3P21580 790 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms