RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 TMEM259Q4ZIN3 620 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 SH2D4BQ5SQS7 431 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 CELF3Q5SZQ8 465 aaKnown RBP17.93■□□□□ 0.46
SYNE3-202ENST00000553340 PRAMEF18Q5VWM3 479 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 PYROXD2Q8N2H3 581 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 LENG1Q96BZ8 264 aaPredicted RBP17.93■□□□□ 0.46
SYNE3-202ENST00000553340 GLUD2P49448 558 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 SLC26A2P50443 739 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 THOP1P52888 689 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 IFRD2Q12894 506 aaPredicted RBP17.93■□□□□ 0.46
SYNE3-202ENST00000553340 CYLC2Q14093 348 aaPredicted RBP17.93■□□□□ 0.46
SYNE3-202ENST00000553340 AMHR2Q16671 573 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 NADK2Q4G0N4 442 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 SETD3Q86TU7 594 aaPredicted RBP17.93■□□□□ 0.46
SYNE3-202ENST00000553340 CCNYQ8ND76 341 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 CNBD2Q96M20 576 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 SPATA33Q96N06 139 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 FCRL3Q96P31 734 aaPredicted RBP17.93■□□□□ 0.46
SYNE3-202ENST00000553340 LRRC40Q9H9A6 602 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 NMRAL1Q9HBL8 299 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 IRAK4Q9NWZ3 460 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 RCOR3Q9P2K3 495 aaPredicted RBP17.93■□□□□ 0.46
SYNE3-202ENST00000553340 RIMS3Q9UJD0 308 aa17.93■□□□□ 0.46
SYNE3-202ENST00000553340 MATN2O00339 956 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 HDAC3O15379 428 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 DPEP1P16444 411 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 ZNF423Q2M1K9 1284 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 PIGGQ5H8A4 983 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 PPM1LQ5SGD2 360 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 KLHDC10Q6PID8 442 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 LBX2Q6XYB7 198 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.92■□□□□ 0.46
SYNE3-202ENST00000553340 ZNF669Q96BR6 464 aaPredicted RBP17.92■□□□□ 0.46
SYNE3-202ENST00000553340 KIF12Q96FN5 646 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 GATA5Q9BWX5 397 aaPredicted RBP17.92■□□□□ 0.46
SYNE3-202ENST00000553340 SMARCAD1Q9H4L7 1026 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 WDR55Q9H6Y2 383 aaPredicted RBP17.92■□□□□ 0.46
SYNE3-202ENST00000553340 ZNF696Q9H7X3 374 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 PRDM16Q9HAZ2 1276 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 SNX9Q9Y5X1 595 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 A0A087WZ62 844 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 NEMP1O14524 444 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 CYP2C8P10632 490 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 XRCC1P18887 633 aaPredicted RBP17.92■□□□□ 0.46
SYNE3-202ENST00000553340 HSPA13P48723 471 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 SOWAHAQ2M3V2 549 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 SEL1L3Q68CR1 1132 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 CLEC14AQ86T13 490 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 NT5DC4Q86YG4 428 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 RIOX2Q8IUF8 465 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 MICALL2Q8IY33 904 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 METTL25Q8N6Q8 603 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 FDXACB1Q9BRP7 624 aaPredicted RBP17.92■□□□□ 0.46
SYNE3-202ENST00000553340 COPS7BQ9H9Q2 264 aaPredicted RBP17.92■□□□□ 0.46
SYNE3-202ENST00000553340 MID2Q9UJV3 735 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 APPL1Q9UKG1 709 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 RAP2CQ9Y3L5 183 aa17.92■□□□□ 0.46
SYNE3-202ENST00000553340 EVPLQ92817 2033 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.91■□□□□ 0.46
SYNE3-202ENST00000553340 SLC22A2O15244 555 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 CD1EP15812 388 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 ARF4P18085 180 aaPredicted RBP17.91■□□□□ 0.46
SYNE3-202ENST00000553340 RPS12P25398 132 aaKnown RBP17.91■□□□□ 0.46
SYNE3-202ENST00000553340 IRF9Q00978 393 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 POU5F1BQ06416 359 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 PDK1Q15118 436 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 LSM12Q3MHD2 195 aaKnown RBP17.91■□□□□ 0.46
SYNE3-202ENST00000553340 STRADAQ7RTN6 431 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 TICAM1Q8IUC6 712 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 ZNF567Q8N184 647 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 URGCPQ8TCY9 931 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 DLG3Q92796 817 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 AGAP3Q96P47 875 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 PPP1R16BQ96T49 567 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 GRIP2Q9C0E4 1043 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 CAB39LQ9H9S4 337 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 OXSMQ9NWU1 459 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 IGSF9Q9P2J2 1179 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 GNEQ9Y223 722 aaKnown RBP17.91■□□□□ 0.46
SYNE3-202ENST00000553340 CFLARO15519 480 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 C2P06681 752 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 PYGLP06737 847 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 LCP1P13796 627 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 ATP6V1B1P15313 513 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 MPSTP25325 297 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 SCNN1AP37088 669 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 RPL14P50914 215 aaKnown RBP17.91■□□□□ 0.46
SYNE3-202ENST00000553340 HK2P52789 917 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 ISLR2Q6UXK2 745 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 PID1Q7Z2X4 250 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 FAM131BQ86XD5 332 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 PGAM4Q8N0Y7 254 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 C7orf31Q8N865 590 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 NETO2Q8NC67 525 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 BHLHE22Q8NFJ8 381 aaPredicted RBP17.91■□□□□ 0.46
SYNE3-202ENST00000553340 OR52K1Q8NGK4 314 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 KBTBD7Q8WVZ9 684 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.91■□□□□ 0.46
SYNE3-202ENST00000553340 PCDHGB4Q9UN71 923 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 G3BP2Q9UN86 482 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms