RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TMA16Q96EY4 203 aaKnown RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 OTUD5Q96G74 571 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 RPL10LQ96L21 214 aaKnown RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 HEXIM2Q96MH2 286 aaKnown RBP4.96□□□□□ -1.61
LIMA1-214ENST00000552783 RTKNQ9BST9 563 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 AKT3Q9Y243 479 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 PCDHA11Q9Y5I1 949 aa4.96□□□□□ -1.61
LIMA1-214ENST00000552783 LRRC37AA6NMS7 1700 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 TRIM43BA6NCK2 446 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 GOLGA8TH3BQL2 631 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 J3QRK9 145 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 USP12O75317 370 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SPAG6O75602 509 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SERPINB7O75635 380 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ZBED1O96006 694 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 CAPNS1P04632 268 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF23P17027 643 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 MGAT1P26572 445 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ALDH3B2P48448 385 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 RGS7P49802 495 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 CDK9P50750 372 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 BACE1P56817 501 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 GSTM4Q03013 218 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SLC44A4Q53GD3 710 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PITRM1Q5JRX3 1037 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 FGD3Q5JSP0 725 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 OR6B2Q6IFH4 312 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 HMBOX1Q6NT76 420 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 CYP2R1Q6VVX0 501 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 NCCRP1Q6ZVX7 275 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ERI1Q8IV48 349 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SLC15A3Q8IY34 581 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 TRIML2Q8N7C3 387 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 C12orf29Q8N999 325 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 RAB3IL1Q8TBN0 382 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 NLRP7Q8WX94 980 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 RXFP2Q8WXD0 754 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 FBXL8Q96CD0 374 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 FCRL3Q96P31 734 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 LGMNQ99538 433 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 LPIN3Q9BQK8 851 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 MRIQ9BWK5 157 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ELOVL4Q9GZR5 314 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 CDH19Q9H159 772 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 MUC3BQ9H195 1237 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 DHX35Q9H5Z1 703 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 RSAD1Q9HA92 442 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PCDH18Q9HCL0 1135 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 TMPRSS4Q9NRS4 437 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 GGA3Q9NZ52 723 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PAK5Q9P286 719 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 BARX2Q9UMQ3 279 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PCDHGC3Q9UN70 934 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 CORINQ9Y5Q5 1042 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF831Q5JPB2 1677 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 KANSL1LA0AUZ9 987 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SH3PXD2BA1X283 911 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 CCDC78A2IDD5 438 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 TK2O00142 265 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 GABBR2O75899 941 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 CPA3P15088 417 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PDGFRAP16234 1089 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 KCNA2P16389 499 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PSMC3P17980 439 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 POLR2BP30876 1174 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ABCD1P33897 745 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 BCAR1P56945 870 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PRAMEP78395 509 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 RELAQ04206 551 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SFSWAPQ12872 951 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 IKBKEQ14164 716 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 LGSNQ5TDP6 509 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 MAP1SQ66K74 1059 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SLFN12LQ6IEE8 588 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 BORAQ6PGQ7 559 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 BNC2Q6ZN30 1099 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 TIFABQ6ZNK6 161 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 RPS27LQ71UM5 84 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 VSIG10LQ86VR7 867 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 CLVS1Q8IUQ0 354 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SULF1Q8IWU6 871 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PYROXD2Q8N2H3 581 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SPATA6LQ8N4H0 392 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 FIBCD1Q8N539 461 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 KYQ8NBH2 561 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 HMGCLL1Q8TB92 370 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 MIPOL1Q8TD10 442 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 EME1Q96AY2 570 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 C12orf43Q96C57 262 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ISOC1Q96CN7 298 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PPP1R10Q96QC0 940 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 KCNK16Q96T55 309 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 APBA2Q99767 749 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SLC39A3Q9BRY0 314 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 GATA5Q9BWX5 397 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 B3GNT5Q9BYG0 378 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 NIF3L1Q9GZT8 377 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 NOL11Q9H8H0 719 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 WDR41Q9HAD4 459 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 PRDM16Q9HAZ2 1276 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms