RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SERPINE1P05121 402 aa15.39■□□□□ 0.05
USP28-214ENST00000545540 POLBP06746 335 aa15.39■□□□□ 0.05
USP28-214ENST00000545540 NCAM1P13591 858 aa15.39■□□□□ 0.05
USP28-214ENST00000545540 RAG1P15918 1043 aa15.39■□□□□ 0.05
USP28-214ENST00000545540 NMBRP28336 390 aa15.39■□□□□ 0.05
USP28-214ENST00000545540 SERPINB9P50453 376 aa15.39■□□□□ 0.05
USP28-214ENST00000545540 TKTL1P51854 596 aa15.39■□□□□ 0.05
USP28-214ENST00000545540 TBL3Q12788 808 aaKnown RBP15.39■□□□□ 0.05
USP28-214ENST00000545540 SCYL1Q96KG9 808 aa15.39■□□□□ 0.05
USP28-214ENST00000545540 SPATS2LQ9NUQ6 558 aaKnown RBP15.39■□□□□ 0.05
USP28-214ENST00000545540 CDH22Q9UJ99 828 aa15.39■□□□□ 0.05
USP28-214ENST00000545540 MT-CYBP00156 380 aaPredicted RBP15.38■□□□□ 0.05
USP28-214ENST00000545540 ITGAXP20702 1163 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 ZBTB17Q13105 803 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 CTBP1Q13363 440 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 PDCD2Q16342 344 aaPredicted RBP15.38■□□□□ 0.05
USP28-214ENST00000545540 FAM187BQ17R55 369 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 TRMT5Q32P41 509 aaKnown RBP15.38■□□□□ 0.05
USP28-214ENST00000545540 LRRC8BQ6P9F7 803 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 KYAT3Q6YP21 454 aaKnown RBP15.38■□□□□ 0.05
USP28-214ENST00000545540 ARHGAP36Q6ZRI8 547 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 RNF135Q8IUD6 432 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 HASPINQ8TF76 798 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 GATA6Q92908 595 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 OLFM3Q96PB7 478 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 C11orf84Q9BUA3 381 aaPredicted RBP15.38■□□□□ 0.05
USP28-214ENST00000545540 ULBP1Q9BZM6 244 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 MMADHCQ9H3L0 296 aaPredicted RBP15.38■□□□□ 0.05
USP28-214ENST00000545540 VANGL2Q9ULK5 521 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 PGM3O95394 542 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 SNAI1O95863 264 aaPredicted RBP15.38■□□□□ 0.05
USP28-214ENST00000545540 C2P06681 752 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 PGAM1P18669 254 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 MAGEA6P43360 314 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 NUDT2P50583 147 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 TTC3P53804 2025 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 SIX6OS1Q8N1H7 587 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 CCNYL1Q8N7R7 359 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 GDPD5Q8WTR4 605 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 TASP1Q9H6P5 420 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 S100A14Q9HCY8 104 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 POMPQ9Y244 141 aa15.38■□□□□ 0.05
USP28-214ENST00000545540 CAPN8A6NHC0 703 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 NFKB1P19838 968 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 PTPN9P43378 593 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 NAGLUP54802 743 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 POU6F1Q14863 301 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 DNAL1Q4LDG9 190 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 SLC27A1Q6PCB7 646 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 SLC30A9Q6PML9 568 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 PAOXQ6QHF9 649 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 GPC2Q8N158 579 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 LINC01465Q8N7H1 131 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 B3GALNT2Q8NCR0 500 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 OR6J1Q8NGC5 347 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 CENPIQ92674 756 aaPredicted RBP15.37■□□□□ 0.05
USP28-214ENST00000545540 CATSPER2Q96P56 530 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 GBP5Q96PP8 586 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 GORASP1Q9BQQ3 440 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 FTHL17Q9BXU8 183 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 SUDS3Q9H7L9 328 aaPredicted RBP15.37■□□□□ 0.05
USP28-214ENST00000545540 DDIT4Q9NX09 232 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 BIRC5O15392 142 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 GK3PQ14409 553 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 SLC25A52Q3SY17 297 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 RWDD4Q6NW29 188 aaKnown RBP15.37■□□□□ 0.05
USP28-214ENST00000545540 MARK2Q7KZI7 788 aaKnown RBP15.37■□□□□ 0.05
USP28-214ENST00000545540 DENND6AQ8IWF6 608 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 SHROOM3Q8TF72 1996 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 NEMP2A6NFY4 417 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 ZNF195O14628 629 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 LIN7AO14910 233 aaPredicted RBP15.37■□□□□ 0.05
USP28-214ENST00000545540 HUS1O60921 280 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 OR6B1O95007 311 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 PTPN3P26045 913 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 NR2C2P49116 596 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 PAPOLAP51003 745 aaKnown RBP15.37■□□□□ 0.05
USP28-214ENST00000545540 BEX3Q00994 111 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 NOMO2Q5JPE7 1267 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 TDRD5Q8NAT2 981 aaKnown RBP15.37■□□□□ 0.05
USP28-214ENST00000545540 SLC16A10Q8TF71 515 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 LPPQ93052 612 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 GATA5Q9BWX5 397 aaPredicted RBP15.37■□□□□ 0.05
USP28-214ENST00000545540 DCDC2Q9UHG0 476 aa15.37■□□□□ 0.05
USP28-214ENST00000545540 TNS1Q9HBL0 1735 aaKnown RBP15.36■□□□□ 0.05
USP28-214ENST00000545540 TREHO43280 583 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 CYP2C9P11712 490 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 ENO3P13929 434 aaPredicted RBP15.36■□□□□ 0.05
USP28-214ENST00000545540 AOC1P19801 751 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 GP5P40197 560 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 GRM3Q14832 879 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 PAQR9Q6ZVX9 377 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 ARCQ7LC44 396 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 SNX32Q86XE0 403 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 ANKRD13AQ8IZ07 590 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 KCTD4Q8WVF5 259 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 RNF34Q969K3 372 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 PAAF1Q9BRP4 392 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 FRMD8Q9BZ67 464 aaPredicted RBP15.36■□□□□ 0.05
USP28-214ENST00000545540 SSX2IPQ9Y2D8 614 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms