RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 ACCSLQ4AC99 568 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 TTC39BQ5VTQ0 682 aaPredicted RBP18.37■□□□□ 0.53
PCF11-206ENST00000533018 IRF2BP1Q8IU81 584 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 FAM114A1Q8IWE2 563 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 SLC2A13Q96QE2 648 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 PPP1R9BQ96SB3 815 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 FAM129BQ96TA1 746 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 CDC6Q99741 560 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 ACE2Q9BYF1 805 aaPredicted RBP18.37■□□□□ 0.53
PCF11-206ENST00000533018 PLCB1Q9NQ66 1216 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 AASDHPPTQ9NRN7 309 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 ASNSD1Q9NWL6 643 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 PCDHGB2Q9Y5G2 931 aa18.37■□□□□ 0.53
PCF11-206ENST00000533018 ANKRD11Q6UB99 2663 aaPredicted RBP18.37■□□□□ 0.53
PCF11-206ENST00000533018 A0A1B0GVM2 712 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 A0A1W2PPC4 97 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 TCAF2A6NFQ2 919 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 SRRM3A6NNA2 597 aaPredicted RBP18.36■□□□□ 0.53
PCF11-206ENST00000533018 FOXN3O00409 490 aaPredicted RBP18.36■□□□□ 0.53
PCF11-206ENST00000533018 LAMA5O15230 3695 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 ADH1BP00325 375 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 PNMA6AP0CW24 399 aaPredicted RBP18.36■□□□□ 0.53
PCF11-206ENST00000533018 PRKCSHP14314 528 aaPredicted RBP18.36■□□□□ 0.53
PCF11-206ENST00000533018 MZF1P28698 734 aaPredicted RBP18.36■□□□□ 0.53
PCF11-206ENST00000533018 CCT8P50990 548 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 OXCT1P55809 520 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 RNASE9P60153 205 aaKnown RBP18.36■□□□□ 0.53
PCF11-206ENST00000533018 IL9RQ01113 521 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 SLC6A3Q01959 620 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 CENPCQ03188 943 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 MAN2A1Q16706 1144 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 HSP90AA4PQ58FG1 418 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 FBXL22Q6P050 247 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 ITIH6Q6UXX5 1313 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 SND1Q7KZF4 910 aaKnown RBP eCLIP18.36■□□□□ 0.53
PCF11-206ENST00000533018 GLRX5Q86SX6 157 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 SLCO6A1Q86UG4 719 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 SLC47A2Q86VL8 602 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 OR2T34Q8NGX1 318 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 OR14C36Q8NHC7 312 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 PTPRN2Q92932 1015 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 IGSF8Q969P0 613 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 SKA1Q96BD8 255 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 SLC6A18Q96N87 628 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 PRMT1Q99873 361 aaKnown RBP18.36■□□□□ 0.53
PCF11-206ENST00000533018 SLC25A13Q9UJS0 675 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 AJAP1Q9UKB5 411 aaPredicted RBP18.36■□□□□ 0.53
PCF11-206ENST00000533018 VANGL2Q9ULK5 521 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 FZD4Q9ULV1 537 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 BTBD3Q9Y2F9 522 aa18.36■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3DA0A087WVF3 549 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3IA0A087WXS9 549 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3EA0A087X179 549 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3KA0A087X1G2 549 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 FAM170AA1A519 330 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 FAM221BA6H8Z2 402 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3FA6NER0 549 aaPredicted RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3LB9A6J9 549 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 H0Y8X5 98 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 M0QYT0 321 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 ERBB2P04626 1255 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3HP0C7X1 549 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 VAV1P15498 845 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 C5AR1P21730 350 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 CLCN1P35523 988 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 GGCXP38435 758 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 RACK1P63244 317 aaKnown RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 ZNF177Q13360 481 aaPredicted RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 EIF4EBP2Q13542 120 aaPredicted RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 AUHQ13825 339 aaKnown RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 RAPGEF1Q13905 1077 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 ELAVL3Q14576 367 aaKnown RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 CCDC157Q569K6 752 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 KCNT1Q5JUK3 1230 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3GQ6DHY5 549 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3CQ6IPX1 549 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 OLFML1Q6UWY5 402 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 TBC1D3Q8IZP1 549 aaPredicted RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 AADATQ8N5Z0 425 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 SIK2Q9H0K1 926 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 NDST4Q9H3R1 872 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 SIX2Q9NPC8 291 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 GOLGA4Q13439 2230 aaKnown RBP18.35■□□□□ 0.53
PCF11-206ENST00000533018 PTPRBP23467 1997 aa18.35■□□□□ 0.53
PCF11-206ENST00000533018 PKD1L2Q7Z442 2459 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 BNIP3LO60238 219 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 ATXN1LP0C7T5 689 aaKnown RBP18.34■□□□□ 0.53
PCF11-206ENST00000533018 GOT1P17174 413 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 NOS2P35228 1153 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 BPIFB4P59827 614 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 MTA1Q13330 715 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 PTPN20Q4JDL3 420 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 VWA3BQ502W6 1294 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 PRAMEF14Q5SWL7 426 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 DBX2Q6ZNG2 339 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 ORAI3Q9BRQ5 295 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 TUBGCP2Q9BSJ2 902 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 CHMP5Q9NZZ3 219 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms