RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GREM1O60565 184 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 OPHN1O60890 802 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 OR1E1P30953 314 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 AVPR1AP37288 418 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 NTHL1P78549 312 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 SLC5A9Q2M3M2 681 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 PRSS36Q5K4E3 855 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 Q6ZNB5 142 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 TMC3Q7Z5M5 1100 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 HOOK3Q86VS8 718 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 CIR1Q86X95 450 aaPredicted RBP21.55■■□□□ 1.04
VPS28-208ENST00000527797 CMTM8Q8IZV2 173 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 CFAP52Q8N1V2 620 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 DEPDC1BQ8WUY9 529 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 SMG7Q92540 1137 aaKnown RBP21.55■■□□□ 1.04
VPS28-208ENST00000527797 SFXN1Q9H9B4 322 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 RAB6BQ9NRW1 208 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 CFAP97Q9P2B7 532 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 ZNF212Q9UDV6 495 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 ZMYM5Q9UJ78 669 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 ARHGAP26Q9UNA1 814 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 FARP1Q9Y4F1 1045 aaPredicted RBP21.55■■□□□ 1.04
VPS28-208ENST00000527797 ARHGAP42A6NI28 874 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 KCNK1O00180 336 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 TRDMT1O14717 391 aaKnown RBP21.55■■□□□ 1.04
VPS28-208ENST00000527797 MAP2K7O14733 419 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 PPFIA2O75334 1257 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 PAPOLAP51003 745 aaKnown RBP21.55■■□□□ 1.04
VPS28-208ENST00000527797 CDH4P55283 916 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 WASHC5Q12768 1159 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 SLMAPQ14BN4 828 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 HTR3DQ70Z44 454 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 C12orf76Q8N812 135 aaPredicted RBP21.55■■□□□ 1.04
VPS28-208ENST00000527797 TTC16Q8NEE8 873 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 PRICKLE1Q96MT3 831 aaPredicted RBP21.55■■□□□ 1.04
VPS28-208ENST00000527797 VAT1Q99536 393 aa21.55■■□□□ 1.04
VPS28-208ENST00000527797 NOL6Q9H6R4 1146 aaKnown RBP21.55■■□□□ 1.04
VPS28-208ENST00000527797 ANAPC1Q9H1A4 1944 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 RASA4BC9J798 803 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 LEFTY2O00292 366 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 RASA4O43374 803 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 PTPN3P26045 913 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 YBEYP58557 167 aaPredicted RBP21.54■■□□□ 1.04
VPS28-208ENST00000527797 KCNC3Q14003 757 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 FAM182AQ5T1J6 154 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 TTC39BQ5VTQ0 682 aaPredicted RBP21.54■■□□□ 1.04
VPS28-208ENST00000527797 TIGD7Q6NT04 549 aaPredicted RBP21.54■■□□□ 1.04
VPS28-208ENST00000527797 CEP128Q6ZU80 1094 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 PID1Q7Z2X4 250 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 ZCCHC9Q8N567 271 aaKnown RBP21.54■■□□□ 1.04
VPS28-208ENST00000527797 NAT8LQ8N9F0 302 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 PRCCQ92733 491 aaPredicted RBP21.54■■□□□ 1.04
VPS28-208ENST00000527797 IGFLR1Q9H665 355 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 DZANK1Q9NVP4 752 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 ATP8A1Q9Y2Q0 1164 aa21.54■■□□□ 1.04
VPS28-208ENST00000527797 CHADO15335 359 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 TSPAN3O60637 253 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 MAFKO60675 156 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 RAMP2O60895 175 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 CLDN11O75508 207 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 SASH3O75995 380 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 PAPLNO95428 1278 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 CHKAP35790 457 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 FDFT1P37268 417 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 RPS24P62847 133 aaKnown RBP21.53■■□□□ 1.04
VPS28-208ENST00000527797 TMC5Q6UXY8 1006 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 ARHGAP36Q6ZRI8 547 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 CHST9Q7L1S5 443 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 CCDC25Q86WR0 208 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 ZNF567Q8N184 647 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 TSEN2Q8NCE0 465 aaKnown RBP21.53■■□□□ 1.04
VPS28-208ENST00000527797 VN1R2Q8NFZ6 395 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 TXLNGYQ9BZA5 131 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 VIPAS39Q9H9C1 493 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 ETNK1Q9HBU6 452 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 KLHL8Q9P2G9 620 aaPredicted RBP21.53■■□□□ 1.04
VPS28-208ENST00000527797 TRHDEQ9UKU6 1024 aa21.53■■□□□ 1.04
VPS28-208ENST00000527797 MRPS23Q9Y3D9 190 aaKnown RBP21.53■■□□□ 1.04
VPS28-208ENST00000527797 METTL18O95568 372 aa21.52■■□□□ 1.04
VPS28-208ENST00000527797 PMS2P54278 862 aa21.52■■□□□ 1.04
VPS28-208ENST00000527797 POLD3Q15054 466 aaPredicted RBP21.52■■□□□ 1.04
VPS28-208ENST00000527797 PARP15Q460N3 678 aa21.52■■□□□ 1.04
VPS28-208ENST00000527797 ANKRD22Q5VYY1 191 aa21.52■■□□□ 1.04
VPS28-208ENST00000527797 FAM217AQ8IXS0 508 aa21.52■■□□□ 1.04
VPS28-208ENST00000527797 HMCESQ96FZ2 354 aa21.52■■□□□ 1.04
VPS28-208ENST00000527797 CEP41Q9BYV8 373 aa21.52■■□□□ 1.04
VPS28-208ENST00000527797 SMG9Q9H0W8 520 aaKnown RBP21.52■■□□□ 1.04
VPS28-208ENST00000527797 NSUN3Q9H649 340 aaKnown RBP21.52■■□□□ 1.04
VPS28-208ENST00000527797 IPO11Q9UI26 975 aaKnown RBP21.52■■□□□ 1.04
VPS28-208ENST00000527797 HPCAL4Q9UM19 191 aa21.52■■□□□ 1.04
VPS28-208ENST00000527797 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.51■■□□□ 1.03
VPS28-208ENST00000527797 TYW5A2RUC4 315 aaKnown RBP21.51■■□□□ 1.03
VPS28-208ENST00000527797 SCAMP3O14828 347 aaKnown RBP21.51■■□□□ 1.03
VPS28-208ENST00000527797 MATN3O15232 486 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 ZNF177Q13360 481 aaPredicted RBP21.51■■□□□ 1.03
VPS28-208ENST00000527797 KCNJ11Q14654 390 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 PARP6Q2NL67 630 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 TEX44Q53QW1 395 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 C6orf118Q5T5N4 469 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 FAXCQ5TGI0 409 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms