RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TRIM13O60858 407 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 ACAT1P24752 427 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 NAGLUP54802 743 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 MTTPP55157 894 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 BST2Q10589 180 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 SYPL2Q5VXT5 272 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 TTC39CQ8N584 583 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 STN1Q9H668 368 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 CHRAC1Q9NRG0 131 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 ETAA1Q9NY74 926 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 RBPJLQ9UBG7 517 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 GJD2Q9UKL4 321 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 SCN1AP35498 2009 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 H3BNX3 289 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 TK2O00142 265 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 MYL4P12829 197 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 AVPR1AP37288 418 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 ALDH1A3P47895 512 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 FAM187BQ17R55 369 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 EPGNQ6UW88 154 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 SPATA6LQ8N4H0 392 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 JADE3Q92613 823 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 KCNK16Q96T55 309 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 C11orf84Q9BUA3 381 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 VCX3BQ9H321 246 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 NMRAL1Q9HBL8 299 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 IARS2Q9NSE4 1012 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 C20orf96Q9NUD7 363 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 USP3Q9Y6I4 520 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 G3V2L1 256 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 FAM72CH0Y354 149 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 ATP6V1B1P15313 513 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 ITGA7Q13683 1181 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 INSCQ1MX18 579 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 ZNF484Q5JVG2 852 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 GRTP1Q5TC63 336 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 FAM72AQ5TYM5 149 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 FAM72DQ6L9T8 149 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 IYDQ6PHW0 289 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 CTU1Q7Z7A3 348 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 KBTBD6Q86V97 674 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 FAM72BQ86X60 149 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 GALNT4Q8N4A0 578 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 URGCPQ8TCY9 931 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 SCYL1Q96KG9 808 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 FERMT1Q9BQL6 677 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 GORASP1Q9BQQ3 440 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 NAT9Q9BTE0 207 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 FZD10Q9ULW2 581 aa9.46□□□□□ -0.9
LIMCH1-215ENST00000512632 SF3B1O75533 1304 aaKnown RBP eCLIP9.45□□□□□ -0.91e-8■■■■■ 160.4
LIMCH1-215ENST00000512632 SPTLC1O15269 473 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 CNMDO75829 334 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 XRCC1P18887 633 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 PIK3R1P27986 724 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 TKTP29401 623 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 MATKP42679 507 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 BCAT1P54687 386 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 PDK1Q15118 436 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 ANKRD20A4Q4UJ75 823 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 HFE2Q6ZVN8 426 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 CATSPER4Q7RTX7 472 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 ZDHHC17Q8IUH5 632 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 ARHGAP18Q8N392 663 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 FAM156AQ8NDB6 213 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 CATSPER2Q96P56 530 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 RBBP8Q99708 897 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 CPNE1Q99829 537 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 SNX25Q9H3E2 840 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 TASP1Q9H6P5 420 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 LRRC40Q9H9A6 602 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 COPS7BQ9H9Q2 264 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 ZDHHC7Q9NXF8 308 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 VANGL2Q9ULK5 521 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 ZBTB24O43167 697 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 PIGNO95427 931 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 ERCC2P18074 760 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 THOP1P52888 689 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 TLR1Q15399 786 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 DBN1Q16643 649 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 PQLC1Q8N2U9 271 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 RCN3Q96D15 328 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 NDNQ99608 321 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 NFKBIZQ9BYH8 718 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 ILKAPQ9H0C8 392 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 NXF3Q9H4D5 531 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 FAM96AQ9H5X1 160 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 OCEL1Q9H607 264 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 CDHR5Q9HBB8 845 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 DMAP1Q9NPF5 467 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 APPL1Q9UKG1 709 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 FIS1Q9Y3D6 152 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 C15orf38-AP3S2A0A0A6YYH1 394 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 HACD1B0YJ81 288 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 BEST1O76090 585 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 JUNP05412 331 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 SPATA31D3P0C874 917 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 PMLP29590 882 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 LIMK2P53671 638 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms