RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SNX25Q9H3E2 840 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ZNF358Q9NW07 568 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SEPT10Q9P0V9 454 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 IGSF9Q9P2J2 1179 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ANGPTL2Q9UKU9 493 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SOX13Q9UN79 622 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SMIM28A0A1B0GU29 152 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MAP3K13O43283 966 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ALOX15P16050 662 aaPredicted RBP16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MAGEA12P43365 314 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SLC25A3Q00325 362 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PDE1BQ01064 536 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SOX4Q06945 474 aaPredicted RBP16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CACNB2Q08289 660 aaPredicted RBP16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ADIGQ0VDE8 80 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DPYSQ14117 519 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DCAF6Q58WW2 860 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 NOTUMQ6P988 496 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RASSF3Q86WH2 238 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MFN1Q8IWA4 741 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SOCS4Q8WXH5 440 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 FAM149B1Q96BN6 582 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PGBD4Q96DM1 585 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 OSMRQ99650 979 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 NAT9Q9BTE0 207 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CFHR5Q9BXR6 569 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GPAMQ9HCL2 828 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DNAJC28Q9NX36 388 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 KLK14Q9P0G3 267 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 COPG2Q9UBF2 871 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SF3B1O75533 1304 aaKnown RBP eCLIP16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SIN3BO75182 1162 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 BEST1O76090 585 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 STK10O94804 968 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 KLHL2O95198 593 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PRKAR2AP13861 404 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 HARS2P49590 506 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MXRA7P84157 204 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PDK1Q15118 436 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TMCO4Q5TGY1 634 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 C1orf146Q5VVC0 180 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 OR52E8Q6IFG1 317 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GATA6Q92908 595 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ATP2A3Q93084 1043 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CERS2Q96G23 380 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ZNF184Q99676 751 aaPredicted RBP16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 YIPF3Q9GZM5 350 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GOLGA2P5Q9HBQ8 144 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DDX43Q9NXZ2 648 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PPM1HQ9ULR3 514 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 APOBEC2Q9Y235 224 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DCLK1O15075 740 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CREB3O43889 395 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GRK2P25098 689 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GP5P40197 560 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PEX19P40855 299 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 NDUFV1P49821 464 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 BEX3Q00994 111 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ZRSR2Q15696 482 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 C1QTNF12Q5T7M4 302 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 C6orf163Q5TEZ5 329 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SYPL2Q5VXT5 272 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PAQR9Q6ZVX9 377 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CMC1Q7Z7K0 106 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SLC25A41Q8N5S1 370 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 POU5F2Q8N7G0 328 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RNF169Q8NCN4 708 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CCNYQ8ND76 341 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ISL2Q96A47 359 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RNF39Q9H2S5 420 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SUDS3Q9H7L9 328 aaPredicted RBP16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SAGE1Q9NXZ1 904 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DLGAP2Q9P1A6 1054 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PCDH10Q9P2E7 1040 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DNAJB4Q9UDY4 337 aa16.46■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SYNJ2BP-COX16A0A087WUM0 186 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CLDN5O00501 218 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CD4P01730 458 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 POLBP06746 335 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZNF865P0CJ78 1059 aaPredicted RBP16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 HSPA8P11142 646 aaKnown RBP16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TYK2P29597 1187 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NOS2P35228 1153 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ABCE1P61221 599 aaKnown RBP16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 RALGPS1Q5JS13 557 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SPANXN3Q5MJ09 141 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 GRTP1Q5TC63 336 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 VWA5B1Q5TIE3 1220 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 RSPH3Q86UC2 560 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PLD6Q8N2A8 252 aaKnown RBP16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DCLK2Q8N568 766 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 GSTCDQ8NEC7 633 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 APPL2Q8NEU8 664 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 OR52K1Q8NGK4 314 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 HNRNPABQ99729 332 aaKnown RBP16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CPNE1Q99829 537 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DUSP16Q9BY84 665 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SNX15Q9NRS6 342 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 COX16Q9P0S2 106 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZNF236Q9UL36 1845 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms