RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 HDAC1Q13547 482 aaPredicted RBP4.39□□□□□ -1.71
USP54-217ENST00000498213 WTAPQ15007 396 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 KRTAP15-1Q3LI76 137 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 ARHGEF16Q5VV41 709 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 TSHZ3Q63HK5 1081 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 HIST2H2BCQ6DN03 193 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 ARMC6Q6NXE6 501 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 PCSK4Q6UW60 755 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 PARM1Q6UWI2 310 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 SLC30A10Q6XR72 485 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 GET4Q7L5D6 327 aaPredicted RBP4.39□□□□□ -1.71
USP54-217ENST00000498213 RASGRP2Q7LDG7 609 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 LONP2Q86WA8 852 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 ARHGEF19Q8IW93 802 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 TMTC2Q8N394 836 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 NME8Q8N427 588 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 PNPLA1Q8N8W4 532 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 OR56A1Q8NGH5 318 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 CCHCR1Q8TD31 782 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 STAMQ92783 540 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 FGF14Q92915 247 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 MTMR8Q96EF0 704 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 FUBP3Q96I24 572 aaKnown RBP eCLIP4.39□□□□□ -1.71
USP54-217ENST00000498213 NELL2Q99435 816 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 TMEM47Q9BQJ4 181 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 LZTS2Q9BRK4 669 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 TEX101Q9BY14 249 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 GLT8D2Q9H1C3 349 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 SERHL2Q9H4I8 314 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 KAT14Q9H8E8 782 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 MANSC1Q9H8J5 431 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 SFXN1Q9H9B4 322 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 LMAN1LQ9HAT1 526 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 TMEM9BQ9NQ34 198 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 VPS45Q9NRW7 570 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 TESQ9UGI8 421 aaKnown RBP4.39□□□□□ -1.71
USP54-217ENST00000498213 PCDHB7Q9Y5E2 793 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 FRMPD4Q14CM0 1322 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 CCDC171Q6TFL3 1326 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 NAV3Q8IVL0 2385 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 CCDC195A0A1B0GUA6 201 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 LNP1A1A4G5 178 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 CAPN8A6NHC0 703 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 RRN3P2A6NIE6 340 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 NT5C1B-RDH14C9J2C7 533 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 ANHXE9PGG2 379 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 H0Y626 953 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 ZNF213O14771 459 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 ZBTB5O15062 677 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 FIBPO43427 364 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 PRDM1O75626 825 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 CDKL5O76039 1030 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 TRIM16O95361 564 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 NUDT3O95989 172 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 FOSP01100 380 aaPredicted RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 FGAP02671 866 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 PARP1P09874 1014 aaKnown RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 CCND2P30279 289 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 RDXP35241 583 aaKnown RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 ALDH1A3P47895 512 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 MTNR1BP49286 362 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 GNAQP50148 359 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 CDC42EP1Q00587 391 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 CREB5Q02930 508 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 MGAT2Q10469 447 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 RESTQ13127 1097 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 LY6DQ14210 128 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 ACAP2Q15057 778 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 IMMTQ16891 758 aaKnown RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 TAF1BQ53T94 588 aaPredicted RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 FBXO47Q5MNV8 452 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 CELF3Q5SZQ8 465 aaKnown RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 FAM102AQ5T9C2 384 aaPredicted RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 EGFLAMQ63HQ2 1017 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 ZNF529Q6P280 563 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 FOXR2Q6PJQ5 311 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 ZNF852Q6ZMS4 543 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 Q6ZPA2 131 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 MARCH9Q86YJ5 346 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 RHOT2Q8IXI1 618 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 PPM1NQ8N819 430 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 LSM14AQ8ND56 463 aaKnown RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 BEND2Q8NDZ0 799 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 CYFIP2Q96F07 1278 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 ZNF558Q96NG5 402 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 INPP4AQ96PE3 977 aaPredicted RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 C7orf25Q9BPX7 421 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 UBAC1Q9BSL1 405 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 SEMA4CQ9C0C4 833 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 SLC32A1Q9H598 525 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 PRORYQ9H606 182 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 CWH43Q9H720 699 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 WDR6Q9NNW5 1121 aaKnown RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 PXMP2Q9NR77 195 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 HEBP1Q9NRV9 189 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 MKS1Q9NXB0 559 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 SPG21Q9NZD8 308 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 IL17BQ9UHF5 180 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 ZNHIT2Q9UHR6 403 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 SCOCQ9UIL1 159 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms