RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TMEM169Q96HH4 297 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 DCUN1D5Q9BTE7 237 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 WDR18Q9BV38 432 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 DCCP43146 1447 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 RBAK-RBAKDNI3L0D1 243 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 OPLAHO14841 1288 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 ZNF862O60290 1169 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 USP12O75317 370 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 HSMCR30P0CW71 290 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 ATP4AP20648 1035 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 AXLP30530 894 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 C16orf72Q14CZ0 275 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 FGD2Q7Z6J4 655 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 FAM126BQ8IXS8 530 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 MRPS31Q92665 395 aaKnown RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 CAMKK2Q96RR4 588 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 CDK5RAP1Q96SZ6 601 aaKnown RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 PAIP1Q9H074 479 aaKnown RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 LRMDAQ9H2I8 198 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 A1CFQ9NQ94 594 aaKnown RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 ENTPD7Q9NQZ7 604 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 A0A087WXM4 84 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 C15orf38-AP3S2A0A0A6YYH1 394 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 SYNCRIPO60506 623 aaKnown RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 DDR2Q16832 855 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 ATP13A4Q4VNC1 1196 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 ARPINQ7Z6K5 226 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 IL22Q9GZX6 179 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 DAPK2Q9UIK4 370 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 FCGRTP55899 365 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 MARSP56192 900 aaKnown RBP16.73■□□□□ 0.27
COL7A1-210ENST00000487017 MTA1Q13330 715 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 KRT78Q8N1N4 520 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-210ENST00000487017 ADAM28Q9UKQ2 775 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 C1orf232A0A0U1RR37 186 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 HOXB8P17481 243 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-210ENST00000487017 SLC25A3Q00325 362 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 TMEM106CQ9BVX2 250 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 PSMB4P28070 264 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 RHBDL3P58872 404 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 SLC20A2Q08357 652 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 DACT2Q5SW24 774 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 VN1R5Q7Z5H4 357 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 STK32CQ86UX6 486 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 SETD9Q8NE22 299 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 DNAJB3Q8WWF6 145 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 ROGDIQ9GZN7 287 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 PTPRHQ9HD43 1115 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 BTBD7Q9P203 1132 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 LIMD1Q9UGP4 676 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 ZMYM2Q9UBW7 1377 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 HOXA2O43364 376 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 CELF2O95319 508 aaKnown RBP16.73■□□□□ 0.27
COL7A1-210ENST00000487017 ATG7O95352 703 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 CDC25CP30307 473 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 OR1E1P30953 314 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 MMP13P45452 471 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 CHN2P52757 468 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 TGFB2P61812 414 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 CCDC157Q569K6 752 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 ARCQ7LC44 396 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 ZNF614Q8N883 585 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 ATXN3LQ9H3M9 355 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 SNCAIPQ9Y6H5 919 aa16.73■□□□□ 0.27
COL7A1-210ENST00000487017 RNF225M0QZC1 329 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 PARNO95453 639 aaKnown RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 LRPAP1P30533 357 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 ATP1A4Q13733 1029 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 TRIM48Q8IWZ4 208 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 OR8H2Q8N162 312 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 METTL6Q8TCB7 284 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 VMP1Q96GC9 406 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 TKTL2Q9H0I9 626 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 hCG_1818297A0A087WSY0 165 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 GLRA2P23416 452 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 PLK1P53350 603 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 RPS7P62081 194 aaKnown RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 SDE2Q6IQ49 451 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 HDDC2Q7Z4H3 204 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 ARHGAP22Q7Z5H3 698 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 FAM228AQ86W67 206 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 ROBO3Q96MS0 1386 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 HS6ST1O60243 411 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 BANF1O75531 89 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 CKMP06732 381 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 PBLDP30039 288 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 NEK3P51956 506 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 C1DQ13901 141 aaKnown RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 FAM183BPQ6ZVS7 135 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 BNIPLQ7Z465 357 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 OR52K1Q8NGK4 314 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 APOL4Q9BPW4 351 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 ADARB2Q9NS39 739 aaKnown RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 PSMD12O00232 456 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 KPNA4O00629 521 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 ZNF7P17097 686 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 MSH3P20585 1137 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 RAB27AP51159 221 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 GJC2Q5T442 439 aaPredicted RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms