RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-215ENST00000485550 TAF5Q15542 800 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 ZC3H12AQ5D1E8 599 aaKnown RBP10.95□□□□□ -0.66
HMGN1-215ENST00000485550 FSCBQ5H9T9 825 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 C6orf118Q5T5N4 469 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 RAP1GAP2Q684P5 730 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 TAC4Q86UU9 113 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 TMPRSS12Q86WS5 348 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 LSM14AQ8ND56 463 aaKnown RBP10.95□□□□□ -0.66
HMGN1-215ENST00000485550 FIBINQ8TAL6 211 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 GANCQ8TET4 914 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 ZNF606Q8WXB4 792 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 SERPINB11Q96P15 392 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 SLC4A5Q9BY07 1137 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 FTSJ1Q9UET6 329 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 SUN2Q9UH99 717 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 INTS6Q9UL03 887 aaKnown RBP10.95□□□□□ -0.66
HMGN1-215ENST00000485550 CNTN6Q9UQ52 1028 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 ANKRD6Q9Y2G4 727 aa10.95□□□□□ -0.66
HMGN1-215ENST00000485550 SYNJ2BP-COX16A0A087WUM0 186 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 TYW5A2RUC4 315 aaKnown RBP10.94□□□□□ -0.66
HMGN1-215ENST00000485550 FAM47DPA6NHR8 397 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 H0Y8X5 98 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 RRP8O43159 456 aaKnown RBP10.94□□□□□ -0.66
HMGN1-215ENST00000485550 IRAK2O43187 625 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 MED7O43513 233 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 FSBPO95073 299 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 FGFR1OPO95684 399 aaKnown RBP10.94□□□□□ -0.66
HMGN1-215ENST00000485550 IGLV3-19P01714 112 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 CSKP41240 450 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 CTSOP43234 321 aaPredicted RBP10.94□□□□□ -0.66
HMGN1-215ENST00000485550 ACADSBP45954 432 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 RPL34P49207 117 aaKnown RBP10.94□□□□□ -0.66
HMGN1-215ENST00000485550 ST8SIA6P61647 398 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 CDH18Q13634 790 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 DCAF6Q58WW2 860 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 MS4A13Q5J8X5 152 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 KCNT1Q5JUK3 1230 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 MPP7Q5T2T1 576 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 FOXR2Q6PJQ5 311 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 GPR155Q7Z3F1 870 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 CCDC117Q8IWD4 279 aaPredicted RBP10.94□□□□□ -0.66
HMGN1-215ENST00000485550 DHX40Q8IX18 779 aaKnown RBP10.94□□□□□ -0.66
HMGN1-215ENST00000485550 LGI2Q8N0V4 545 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 HJURPQ8NCD3 748 aaPredicted RBP10.94□□□□□ -0.66
HMGN1-215ENST00000485550 AZIN2Q96A70 460 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 TTC17Q96AE7 1141 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 SLC39A13Q96H72 371 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 LMLNQ96KR4 655 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 MED15Q96RN5 788 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 KCNK17Q96T54 332 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 DDX50Q9BQ39 737 aaKnown RBP10.94□□□□□ -0.66
HMGN1-215ENST00000485550 BTBD1Q9H0C5 482 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 TM9SF3Q9HD45 589 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 COX16Q9P0S2 106 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 KIAA1468Q9P260 1216 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 TLR6Q9Y2C9 796 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 PTPN13Q12923 2485 aa10.94□□□□□ -0.66
HMGN1-215ENST00000485550 DOPEY2Q9Y3R5 2298 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 TEX51A0A1B0GUA7 166 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 FAM170AA1A519 330 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 BECN2A8MW95 431 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 TTC34A8MYJ7 566 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 SART1O43290 800 aaKnown RBP10.93□□□□□ -0.66
HMGN1-215ENST00000485550 SIN3BO75182 1162 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 GRAP2O75791 330 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 SEMA4FO95754 770 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 TRUB2O95900 331 aaKnown RBP10.93□□□□□ -0.66
HMGN1-215ENST00000485550 APOEP02649 317 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 TACR2P21452 398 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 HNF1BP35680 557 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 YWHAZP63104 245 aaKnown RBP10.93□□□□□ -0.66
HMGN1-215ENST00000485550 CXADRP78310 365 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 CCDC173Q0VFZ6 552 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 TARDBPQ13148 414 aaKnown RBP eCLIP10.93□□□□□ -0.669e-9■■■□□ 17.5
HMGN1-215ENST00000485550 DNAJC3Q13217 504 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 TEAD4Q15561 434 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 TAF1BQ53T94 588 aaPredicted RBP10.93□□□□□ -0.66
HMGN1-215ENST00000485550 PITRM1Q5JRX3 1037 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 PRAMEF14Q5SWL7 426 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 TRIM65Q6PJ69 517 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 TMEM110Q86TL2 294 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 CHSY1Q86X52 802 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 CIR1Q86X95 450 aaPredicted RBP10.93□□□□□ -0.66
HMGN1-215ENST00000485550 GATAD2AQ86YP4 633 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 PASD1Q8IV76 773 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 APCDD1Q8J025 514 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 WDTC1Q8N5D0 677 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 STK32AQ8WU08 396 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 IGSF8Q969P0 613 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 MYO19Q96H55 970 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 RPL10LQ96L21 214 aaKnown RBP10.93□□□□□ -0.66
HMGN1-215ENST00000485550 MRGPRX3Q96LB0 322 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 POPDC2Q9HBU9 364 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 PLA2G2EQ9NZK7 142 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 SLCO3A1Q9UIG8 710 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 RWDD2AQ9UIY3 292 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.93□□□□□ -0.66
HMGN1-215ENST00000485550 CEP83Q9Y592 693 aa10.93□□□□□ -0.66
HMGN1-215ENST00000485550 NYNRINQ9P2P1 1898 aaKnown RBP10.93□□□□□ -0.66
HMGN1-215ENST00000485550 ENC1O14682 589 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms