RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 KLRC2P26717 231 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 ARNTP27540 789 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 IL1R2P27930 398 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 CXCR5P32302 372 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 RDXP35241 583 aaKnown RBP6.91□□□□□ -1.3
USP48-208ENST00000479177 GJC1P36383 396 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 SSR1P43307 286 aaKnown RBP6.91□□□□□ -1.3
USP48-208ENST00000479177 ALDH1A3P47895 512 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 ATXN1P54253 815 aaKnown RBP6.91□□□□□ -1.3
USP48-208ENST00000479177 RWDD2BP57060 319 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 TAF10Q12962 218 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 TUBB2AQ13885 445 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 CDO1Q16878 200 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 WHAMMP3Q1A5X7 153 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 DCAF6Q58WW2 860 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 SYPL2Q5VXT5 272 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 BSPRYQ5W0U4 402 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 TXNRD3NBQ6F5E7 133 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 SPATA31D4Q6ZUB0 917 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 CCDC149Q6ZUS6 474 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 ADGRD2Q7Z7M1 963 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 MON1AQ86VX9 555 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 KATNAL2Q8IYT4 538 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 SLC22A17Q8WUG5 538 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 ARNTL2Q8WYA1 636 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 OVCA2Q8WZ82 227 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 PSMG2Q969U7 264 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 PGAP3Q96FM1 320 aaPredicted RBP6.91□□□□□ -1.3
USP48-208ENST00000479177 PBKQ96KB5 322 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 SLITRK1Q96PX8 696 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 NCAPGQ9BPX3 1015 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 TUBB2BQ9BVA1 445 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 FAM204AQ9H8W3 233 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 CERS4Q9HA82 394 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 SLC28A3Q9HAS3 691 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 ABCC13Q9NSE7 274 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 KLHL11Q9NVR0 708 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 OSER1Q9NX31 292 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 RRN3Q9NYV6 651 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 EHD2Q9NZN4 543 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 CALCOCO1Q9P1Z2 691 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 PCDHA3Q9Y5H8 950 aa6.91□□□□□ -1.3
USP48-208ENST00000479177 NOTCH4Q99466 2003 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 C3orf70A6NLC5 250 aaPredicted RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 M0QYT0 321 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 CAPN9O14815 690 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 TMPRSS2O15393 492 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 IRAK2O43187 625 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 PRPSAP2O60256 369 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 CEP104O60308 925 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 TRUB2O95900 331 aaKnown RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 KRT7P08729 469 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 POU2F2P09086 479 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 EPCAMP16422 314 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 SPINK2P20155 84 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 NME2P22392 152 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 HOXA9P31269 272 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 EPHB3P54753 998 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 DAB2P98082 770 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 DEUP1Q05D60 604 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 CKAP4Q07065 602 aaKnown RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 EIF4EBP2Q13542 120 aaPredicted RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 DUSP6Q16828 381 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 HADHQ16836 314 aaKnown RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 SMTNL2Q2TAL5 461 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 SNX30Q5VWJ9 437 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 BTBD8Q5XKL5 378 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 RTL10Q7L3V2 364 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 ZNF572Q7Z3I7 529 aaPredicted RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 ITIH5Q86UX2 942 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 TMC8Q8IU68 726 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 CREG2Q8IUH2 290 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 ZDHHC13Q8IUH4 622 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 RASGEF1CQ8N431 466 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 PDZD8Q8NEN9 1154 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 MICAL1Q8TDZ2 1067 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 TEKT4Q8WW24 435 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 CASP10Q92851 521 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 ACSF2Q96CM8 615 aaPredicted RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 CAPZA3Q96KX2 299 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 FAM83CQ9BQN1 747 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 SNRNP25Q9BV90 132 aaKnown RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 KRTAP4-2Q9BYR5 136 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 PLEKHA4Q9H4M7 779 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 ZWILCHQ9H900 591 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 ZNF334Q9HCZ1 680 aaPredicted RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 WDR6Q9NNW5 1121 aaKnown RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 MAN1C1Q9NR34 630 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 TLR8Q9NR97 1041 aaKnown RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 PIGVQ9NUD9 493 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.9□□□□□ -1.3
USP48-208ENST00000479177 DDIT4Q9NX09 232 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 DDX56Q9NY93 547 aaKnown RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 CLIC5Q9NZA1 410 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 SMARCAL1Q9NZC9 954 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 PCSK1NQ9UHG2 260 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 PPM1HQ9ULR3 514 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 TTC7AQ9ULT0 858 aaPredicted RBP6.9□□□□□ -1.3
USP48-208ENST00000479177 USP18Q9UMW8 372 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 MAGED2Q9UNF1 606 aaPredicted RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms