RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CBWD6Q4V339 395 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 ZNF394Q53GI3 561 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 CBWD3Q5JTY5 395 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 CBWD5Q5RIA9 395 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 NAIF1Q69YI7 327 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 ISM2Q6H9L7 571 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 PKN3Q6P5Z2 889 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 NXPE4Q6UWF7 544 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 GPRIN1Q7Z2K8 1008 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 TADA2BQ86TJ2 420 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 ADGRG2Q8IZP9 1017 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 RPLP0P6Q8NHW5 317 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 BAHD1Q8TBE0 780 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 JAKMIP2Q96AA8 810 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 TMEM176AQ96HP8 235 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 MIPEPQ99797 713 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 DUSP9Q99956 384 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 DUSP16Q9BY84 665 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 RNF32Q9H0A6 362 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 CCSER2Q9H7U1 834 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 METTL14Q9HCE5 456 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 FBRSL1Q9HCM7 1045 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 CISHQ9NSE2 258 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 ARMCX3Q9UH62 379 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 MAN1B1Q9UKM7 699 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 TPX2Q9ULW0 747 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 COQ4Q9Y3A0 265 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 NUP205Q92621 2012 aa7.15□□□□□ -1.27
CCDC88A-213ENST00000476903 SDK1Q7Z5N4 2213 aa7.15□□□□□ -1.27
CCDC88A-213ENST00000476903 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 SCAMP3O14828 347 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 RPP40O75818 363 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 APODP05090 189 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 RETP07949 1114 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 CCDC192P0DO97 292 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 IRF1P10914 325 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 RALAP11233 206 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 BMP7P18075 431 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 TBXAS1P24557 533 aaPredicted RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 TRHRP34981 398 aaPredicted RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 ATP5C1P36542 298 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 KIF11P52732 1056 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 HK2P52789 917 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 RAD23BP54727 409 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 SLC8A3P57103 927 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 GAD2Q05329 585 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 CETN1Q12798 172 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 SRSF5Q13243 272 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 CUL2Q13617 745 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 DMC1Q14565 340 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 LPAL2Q16609 132 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 GAB4Q2WGN9 574 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 CCDC40Q4G0X9 1142 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 PREPLQ4J6C6 727 aaPredicted RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 BTBD8Q5XKL5 378 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 ARHGAP17Q68EM7 881 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 KLHL10Q6JEL2 608 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 KLHDC10Q6PID8 442 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 RHBDF2Q6PJF5 856 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 FOXR2Q6PJQ5 311 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 THADAQ6YHU6 1953 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 CEP68Q76N32 757 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 SYT13Q7L8C5 426 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 CCDC186Q7Z3E2 898 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 CAMKK1Q8N5S9 505 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 SLC4A11Q8NBS3 891 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 GAB3Q8WWW8 586 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 NELFBQ8WX92 580 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 SLC35C1Q96A29 364 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 CDK5RAP1Q96SZ6 601 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 PNKPQ96T60 521 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 UBXN6Q9BZV1 441 aa7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 LSM7Q9UK45 103 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-213ENST00000476903 CEP192Q8TEP8 1941 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 PLXND1Q9Y4D7 1925 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 A0A1W2PQH9 124 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 WASH4PA8MWX3 477 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 K7EQS6 105 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 PMM2O15305 246 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 HOXC11O43248 304 aaPredicted RBP7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 LRP3O75074 770 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 KAT7O95251 611 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 APBB3O95704 486 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 GNA14O95837 355 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 TBX18O95935 607 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 RARGP13631 454 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 SDHBP21912 280 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 TNFRSF4P43489 277 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 SLC6A11P48066 632 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 PXNP49023 591 aaPredicted RBP7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 FMO5P49326 533 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 PGFP49763 221 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 BCAT1P54687 386 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 MRPS21P82921 87 aaKnown RBP7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 LMNB2Q03252 620 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 PAK1Q13153 545 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 MORC3Q14149 939 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 GOLGA7BQ2TAP0 167 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 ANO4Q32M45 955 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms