RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 C18orf8Q96DM3 657 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 CAMK1GQ96NX5 476 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 RAB6CQ9H0N0 254 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 MIR1-1HGQ9H1L0 117 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.54□□□□□ -0.08
UPF3A-204ENST00000475218 SUSD2Q9UGT4 822 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 ANGPTL2Q9UKU9 493 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 FREM2Q5SZK8 3169 aa14.54□□□□□ -0.08
UPF3A-204ENST00000475218 CFAP47Q6ZTR5 3102 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 SPAARA0A1B0GVQ0 90 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 MID1O15344 667 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 BCAT2O15382 392 aaPredicted RBP14.53□□□□□ -0.08
UPF3A-204ENST00000475218 CNTN5O94779 1100 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 GFPT2O94808 682 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 SEMA4FO95754 770 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 DNTTP04053 509 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 IGHV4-34P06331 123 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 SPINK2P20155 84 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 FMO1Q01740 532 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 CST6Q15828 149 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 ALFQ53S48 1182 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 TTC39BQ5VTQ0 682 aaPredicted RBP14.53□□□□□ -0.08
UPF3A-204ENST00000475218 NAA35Q5VZE5 725 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 AADATQ8N5Z0 425 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 KNL1Q8NG31 2342 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 TMEM131Q92545 1883 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 RNF34Q969K3 372 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 RPRD1AQ96P16 312 aaPredicted RBP14.53□□□□□ -0.08
UPF3A-204ENST00000475218 SYNCQ9H7C4 482 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 FAM207AQ9NSI2 230 aaPredicted RBP14.53□□□□□ -0.08
UPF3A-204ENST00000475218 SLC12A6Q9UHW9 1150 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 CEP83Q9Y592 693 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 DMXL2Q8TDJ6 3036 aa14.53□□□□□ -0.08
UPF3A-204ENST00000475218 TARSL2A2RTX5 802 aaKnown RBP14.52□□□□□ -0.08
UPF3A-204ENST00000475218 LSM8O95777 96 aaKnown RBP14.52□□□□□ -0.08
UPF3A-204ENST00000475218 CYP1A1P04798 512 aaPredicted RBP14.52□□□□□ -0.08
UPF3A-204ENST00000475218 SYPP08247 313 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 GNSP15586 552 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 ZNF18P17022 549 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 SULT1E1P49888 294 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 POLR2FP61218 127 aaKnown RBP14.52□□□□□ -0.08
UPF3A-204ENST00000475218 ST8SIA6P61647 398 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 SLC12A1Q13621 1099 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 KCNT1Q5JUK3 1230 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 RABGAP1LQ5R372 815 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 FAM102AQ5T9C2 384 aaPredicted RBP14.52□□□□□ -0.08
UPF3A-204ENST00000475218 LAYNQ6UX15 382 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 USP30Q70CQ3 517 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 ERICH1Q86X53 443 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 MMAAQ8IVH4 418 aaKnown RBP14.52□□□□□ -0.08
UPF3A-204ENST00000475218 STK40Q8N2I9 435 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 PSMB7Q99436 277 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 FEM1AQ9BSK4 669 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 BTBD1Q9H0C5 482 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 TKTL2Q9H0I9 626 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 SIK2Q9H0K1 926 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 EBF2Q9HAK2 575 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 ZNF212Q9UDV6 495 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 LIMA1Q9UHB6 759 aaKnown RBP14.52□□□□□ -0.08
UPF3A-204ENST00000475218 TBC1D30Q9Y2I9 924 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 DOCK4Q8N1I0 1966 aa14.52□□□□□ -0.08
UPF3A-204ENST00000475218 EDDM13A0A1B0GTR0 161 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 A0A1B0GVT2 93 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 OPHN1O60890 802 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 COPB1P53618 953 aaKnown RBP14.52□□□□□ -0.09
UPF3A-204ENST00000475218 ATXN3P54252 364 aaPredicted RBP14.52□□□□□ -0.09
UPF3A-204ENST00000475218 GALCP54803 685 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 PTP4A2Q12974 167 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 SLC25A52Q3SY17 297 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 GBP4Q96PP9 640 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 PCDHB18PQ96TA0 734 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 TMEM121BQ9BXQ6 578 aaPredicted RBP14.52□□□□□ -0.09
UPF3A-204ENST00000475218 NEUROG2Q9H2A3 272 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 TM9SF3Q9HD45 589 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 NLRC4Q9NPP4 1024 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 FBXL12Q9NXK8 326 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 RRN3Q9NYV6 651 aa14.52□□□□□ -0.09
UPF3A-204ENST00000475218 FNDC3AQ9Y2H6 1198 aaKnown RBP14.52□□□□□ -0.09
UPF3A-204ENST00000475218 IGLV3-10A0A075B6K4 115 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 A0A1W2PP55 124 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 GOLGA8SH3BPF8 625 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 SH3BP5O60239 455 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 MOCS3O95396 460 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 MMP8P22894 467 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 SLC8A1P32418 973 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 DRD3P35462 400 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 SOX5P35711 763 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 CSNK1EP49674 416 aaKnown RBP14.51□□□□□ -0.09
UPF3A-204ENST00000475218 VASPP50552 380 aaPredicted RBP14.51□□□□□ -0.09
UPF3A-204ENST00000475218 SNX16P57768 344 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 CDR2Q01850 454 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 FOXC1Q12948 553 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 SYCP1Q15431 976 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 BRMS1LQ5PSV4 323 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 CCDC117Q8IWD4 279 aaPredicted RBP14.51□□□□□ -0.09
UPF3A-204ENST00000475218 HDDC3Q8N4P3 179 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 EMC1Q8N766 993 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 FAM131CQ96AQ9 280 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 CFAP57Q96MR6 1250 aa14.51□□□□□ -0.09
UPF3A-204ENST00000475218 ZDHHC5Q9C0B5 715 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms