RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PDCD7Q8N8D1 485 aaKnown RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF347Q96SE7 839 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 SCUBE2Q9NQ36 999 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 RSL24D1Q9UHA3 163 aaKnown RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 MAFBQ9Y5Q3 323 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 GABARAPO95166 117 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 CLPTM1O96005 669 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 HOXC6P09630 235 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 BMP8BP34820 402 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 COPAP53621 1224 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 LIMK2P53671 638 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 DNAJB13P59910 316 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ACVR1Q04771 509 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 DMP1Q13316 513 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 STRIP1Q5VSL9 837 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ARHGAP17Q68EM7 881 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 BMP8AQ7Z5Y6 402 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 GSDMBQ8TAX9 411 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 BPIFB1Q8TDL5 484 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 RNF157Q96PX1 679 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 UNC45AQ9H3U1 944 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 CYP3A43Q9HB55 503 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 QPCTLQ9NXS2 382 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF541Q9H0D2 1346 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 TRBV5-3A0A0A0MS03 114 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ARHGAP42A6NI28 874 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 PPEF1O14829 653 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ICAM1P05362 532 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ARP10275 920 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 AXLP30530 894 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 DARS2Q6PI48 645 aaKnown RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 LCLAT1Q6UWP7 414 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 FAM83AQ86UY5 434 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 GPD1LQ8N335 351 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 AFAP1L2Q8N4X5 818 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 BORCS5Q969J3 196 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 TOPORSQ9NS56 1045 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 OXSMQ9NWU1 459 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 AFG3L2Q9Y4W6 797 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 AP1M2Q9Y6Q5 423 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 CLIC2O15247 247 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 AQP9O43315 295 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 FUCA1P04066 466 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 KCNA2P16389 499 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 TGM2P21980 687 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 APLP1P51693 650 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 OTUD4Q01804 1114 aaKnown RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 RIPPLY1Q0D2K3 151 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ATP1A4Q13733 1029 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SEPT6Q14141 434 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 CRY1Q16526 586 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 TDRD10Q5VZ19 366 aaKnown RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 NCCRP1Q6ZVX7 275 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 RAB44Q7Z6P3 723 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 PRPF39Q86UA1 669 aaKnown RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 UNC45BQ8IWX7 931 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 GCOM2Q9BZD3 368 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 DRC3Q9H069 523 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 KCNH7Q9NS40 1196 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ASNSD1Q9NWL6 643 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SLX4Q8IY92 1834 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 F5H423 210 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 F8VP50 259 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 MGEA5O60502 916 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 OATP04181 439 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ALDH1A3P47895 512 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SUOXP51687 545 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 HUNKP57058 714 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF200P98182 395 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 HIC1Q14526 733 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 FNBP1LQ5T0N5 605 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 XAF1Q6GPH4 301 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ABHD15Q6UXT9 468 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 WDR49Q8IV35 697 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 QKIQ96PU8 341 aaKnown RBP eCLIP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 NIF3L1Q9GZT8 377 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 GBA2Q9HCG7 927 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ARHGAP26Q9UNA1 814 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SPDYE16A6NNV3 312 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 TRIM49D1C9J1S8 452 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 POC1B-GALNT4F8VUJ3 575 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SPECC1L-ADORA2AF8WAN1 911 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 LDHAP00338 332 aaKnown RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 KCNQ4P56696 695 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 DYNLT1P63172 113 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SLC12A1Q13621 1099 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 MGAT5BQ3V5L5 792 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 OTUD1Q5VV17 481 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 LRRC8BQ6P9F7 803 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SLC16A12Q6ZSM3 486 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 TERB1Q8NA31 727 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 PPP4R1Q8TF05 950 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 TADA1Q96BN2 335 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 GBP5Q96PP8 586 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 GPR22Q99680 433 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SLC7A5P2Q9GIP4 190 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 HAPLN2Q9GZV7 340 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 COL20A1Q9P218 1284 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 USP22Q9UPT9 525 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms