RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 FBXL12Q9NXK8 326 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 ARHGEF38Q9NXL2 777 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 OR51B4Q9Y5P0 310 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 A0A1B0GVM2 712 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 TCAF2A6NFQ2 919 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 EPHB6O15197 1021 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 SH3BP5O60239 455 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 CNTN5O94779 1100 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 CSNK1EP49674 416 aaKnown RBP21.38■■□□□ 1.01
SDC1-205ENST00000447124 CST6Q15828 149 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 USP30Q70CQ3 517 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 ZNF683Q8IZ20 524 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 STK40Q8N2I9 435 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 EPS8L1Q8TE68 723 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 CPA5Q8WXQ8 436 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 SNX19Q92543 992 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 TBCBQ99426 244 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 ZDHHC5Q9C0B5 715 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 TKTL2Q9H0I9 626 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 SIK2Q9H0K1 926 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 NEUROG2Q9H2A3 272 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 TMPRSS4Q9NRS4 437 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 RRN3Q9NYV6 651 aa21.38■■□□□ 1.01
SDC1-205ENST00000447124 EDDM13A0A1B0GTR0 161 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 A0A1B0GVT2 93 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 A0A1W2PP55 124 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 FSBPO95073 299 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 CHRNB2P17787 502 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 SLC8A1P32418 973 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 SCNN1AP37088 669 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 GALCP54803 685 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 SLC14A1Q13336 389 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 TTC31Q49AM3 519 aaPredicted RBP21.37■■□□□ 1.01
SDC1-205ENST00000447124 TTC39BQ5VTQ0 682 aaPredicted RBP21.37■■□□□ 1.01
SDC1-205ENST00000447124 GANCQ8TET4 914 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 FRS2Q8WU20 508 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 SLC20A1Q8WUM9 679 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 PGAP3Q96FM1 320 aaPredicted RBP21.37■■□□□ 1.01
SDC1-205ENST00000447124 FEM1AQ9BSK4 669 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 WDCPQ9H6R7 721 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 TMEM59LQ9UK28 342 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 NOCTQ9UK39 431 aaKnown RBP21.37■■□□□ 1.01
SDC1-205ENST00000447124 SCML1Q9UN30 329 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 NCKAP1Q9Y2A7 1128 aa21.37■■□□□ 1.01
SDC1-205ENST00000447124 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.36■■□□□ 1.01
SDC1-205ENST00000447124 C10orf142B7Z368 130 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 RNASEH1O60930 286 aaKnown RBP21.36■■□□□ 1.01
SDC1-205ENST00000447124 GFPT2O94808 682 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 IGHV4-34P06331 123 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 FLT3P36888 993 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 SULT1E1P49888 294 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 NOMO3P69849 1222 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 SIM1P81133 766 aaPredicted RBP21.36■■□□□ 1.01
SDC1-205ENST00000447124 ZNF177Q13360 481 aaPredicted RBP21.36■■□□□ 1.01
SDC1-205ENST00000447124 ALFQ53S48 1182 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 FAM102AQ5T9C2 384 aaPredicted RBP21.36■■□□□ 1.01
SDC1-205ENST00000447124 NAA35Q5VZE5 725 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 RNF219Q5W0B1 726 aaPredicted RBP21.36■■□□□ 1.01
SDC1-205ENST00000447124 GAREM1Q9H706 876 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 EBF2Q9HAK2 575 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 TM9SF3Q9HD45 589 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 TBC1D30Q9Y2I9 924 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 SIK3Q9Y2K2 1263 aa21.36■■□□□ 1.01
SDC1-205ENST00000447124 GOLGA8SH3BPF8 625 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 LSM8O95777 96 aaKnown RBP21.35■■□□□ 1.01
SDC1-205ENST00000447124 CD27P26842 260 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 VASPP50552 380 aaPredicted RBP21.35■■□□□ 1.01
SDC1-205ENST00000447124 JAM2P57087 298 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 POLR2FP61218 127 aaKnown RBP21.35■■□□□ 1.01
SDC1-205ENST00000447124 DEUP1Q05D60 604 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 SULT2A1Q06520 285 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 KIF19Q2TAC6 998 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 HLA-BQ31612 363 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 SLC25A52Q3SY17 297 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 KCNT1Q5JUK3 1230 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 BRMS1LQ5PSV4 323 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 KIAA0895LQ68EN5 471 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 BNIPLQ7Z465 357 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 AADATQ8N5Z0 425 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 OSGEPQ9NPF4 335 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 NLRC4Q9NPP4 1024 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 FAM207AQ9NSI2 230 aaPredicted RBP21.35■■□□□ 1.01
SDC1-205ENST00000447124 STAP1Q9ULZ2 295 aa21.35■■□□□ 1.01
SDC1-205ENST00000447124 FNDC3AQ9Y2H6 1198 aaKnown RBP21.35■■□□□ 1.01
SDC1-205ENST00000447124 FAM47DPA6NHR8 397 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 DRGXA6NNA5 263 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 KCNK3O14649 394 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 CLDN11O75508 207 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 F9P00740 461 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 CYP1A1P04798 512 aaPredicted RBP21.34■■□□□ 1.01
SDC1-205ENST00000447124 PSMD8P48556 350 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 METAP1P53582 386 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 COPB1P53618 953 aaKnown RBP21.34■■□□□ 1.01
SDC1-205ENST00000447124 CDH4P55283 916 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 OXCT1P55809 520 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 FMO1Q01740 532 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 MTA1Q13330 715 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 RAB6CQ53S08 254 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 NCEH1Q6PIU2 408 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 LAYNQ6UX15 382 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms