RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 TMEM126BQ8IUX1 230 aa8.77□□□□□ -1.01
HPS4-206ENST00000439453 ERI1Q8IV48 349 aaKnown RBP8.77□□□□□ -1.01
HPS4-206ENST00000439453 KIAA0319LQ8IZA0 1049 aa8.77□□□□□ -1.01
HPS4-206ENST00000439453 BBS5Q8N3I7 341 aa8.77□□□□□ -1.01
HPS4-206ENST00000439453 ADCY4Q8NFM4 1077 aa8.77□□□□□ -1.01
HPS4-206ENST00000439453 JOSD2Q8TAC2 188 aa8.77□□□□□ -1.01
HPS4-206ENST00000439453 PPP4R1Q8TF05 950 aa8.77□□□□□ -1.01
HPS4-206ENST00000439453 TRIM56Q9BRZ2 755 aaKnown RBP8.77□□□□□ -1.01
HPS4-206ENST00000439453 RTKNQ9BST9 563 aa8.77□□□□□ -1.01
HPS4-206ENST00000439453 FRMD8Q9BZ67 464 aaPredicted RBP8.77□□□□□ -1.01
HPS4-206ENST00000439453 PCSK1NQ9UHG2 260 aa8.77□□□□□ -1.01
HPS4-206ENST00000439453 ZNF232Q9UNY5 417 aa8.77□□□□□ -1.01
HPS4-206ENST00000439453 KIAA0355O15063 1070 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 KPNA6O60684 536 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 SERPINE1P05121 402 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 CPA3P15088 417 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 VARSP26640 1264 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 SERPINB9P50453 376 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 CDKL1Q00532 357 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 GPNMBQ14956 572 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 TAF5Q15542 800 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 SLC44A4Q53GD3 710 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 TRMT10BQ6PF06 316 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 CAND1Q86VP6 1230 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 HSPH1Q92598 858 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 SORT1Q99523 831 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 CALN1Q9BXU9 219 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 XPNPEP1Q9NQW7 623 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 TBC1D22BQ9NU19 505 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 ARHGAP28Q9P2N2 729 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 STK39Q9UEW8 545 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 RSL24D1Q9UHA3 163 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 GTF2IRD1Q9UHL9 959 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 TCEAL9Q9UHQ7 104 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 RIMS3Q9UJD0 308 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 EMCNQ9ULC0 261 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 FAF1Q9UNN5 650 aaPredicted RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 ATP11BQ9Y2G3 1177 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 TDRKHQ9Y2W6 561 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 SPTBN5Q9NRC6 3674 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 TRANK1O15050 2925 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 FAM159BA6NKW6 160 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 H7C0C1 242 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 ZNF195O14628 629 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 DCXO43602 365 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 DKC1O60832 514 aaKnown RBP eCLIP8.76□□□□□ -1.01
HPS4-206ENST00000439453 KRT3P12035 628 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 ABCD1P33897 745 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 ATP5OP48047 213 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 CD97P48960 835 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 MRPS22P82650 360 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 NOMO1Q15155 1222 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 STXBP5Q5T5C0 1151 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 N4BP2L1Q5TBK1 243 aaPredicted RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 FAXCQ5TGI0 409 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 ATG14Q6ZNE5 492 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 TIFABQ6ZNK6 161 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 GALNT4Q8N4A0 578 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 UBR7Q8N806 425 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 RIN3Q8TB24 985 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 ZNF518BQ9C0D4 1074 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 COPS7BQ9H9Q2 264 aaPredicted RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 PCDH18Q9HCL0 1135 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 PAK5Q9P286 719 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 AGO2Q9UKV8 859 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 PAIP2BQ9ULR5 123 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 ZNF711Q9Y462 761 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 COL4A6Q14031 1691 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 PQBP1O60828 265 aaKnown RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 ALOX15P16050 662 aaPredicted RBP8.76□□□□□ -1.01
HPS4-206ENST00000439453 SYN1P17600 705 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 HSPA13P48723 471 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 SP4Q02446 784 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 KLF10Q13118 480 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 SCARA3Q6AZY7 606 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 CROCCP3Q8IVE0 287 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 SMYD1Q8NB12 490 aa8.76□□□□□ -1.01
HPS4-206ENST00000439453 SUPT20HL2P0C7V6 817 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 CDK9P50750 372 aaKnown RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 MMRN1Q13201 1228 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 ZNF394Q53GI3 561 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 FSCBQ5H9T9 825 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 ZFP1Q6P2D0 407 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 Q6ZNX1 250 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 CMASQ8NFW8 434 aaPredicted RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 OR5B17Q8NGF7 314 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 GSDMBQ8TAX9 411 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 DEPDC1BQ8WUY9 529 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 SEPT1Q8WYJ6 367 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 CEP170P1Q96L14 293 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 SERPINI1Q99574 410 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 GDF15Q99988 308 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 HAUS8Q9BT25 410 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 RBAKQ9NYW8 714 aaPredicted RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 MAFBQ9Y5Q3 323 aaPredicted RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 HEMK1Q9Y5R4 338 aaPredicted RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 A0A1B0GTW7 788 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 WDR64B1ANS9 1081 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 H3BRB1 525 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 BOLA2-SMG1P6H3BVE0 249 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms