RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 YWHAZP63104 245 aaKnown RBP14.97□□□□□ -0.01
SDC1-204ENST00000429035 APBA1Q02410 837 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 NME3Q13232 169 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 TAF5Q15542 800 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 POM121L1PQ3SYA9 428 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 ACCSLQ4AC99 568 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 OR6B2Q6IFH4 312 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 TRIM65Q6PJ69 517 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 FOXR2Q6PJQ5 311 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 DHRS13Q6UX07 377 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 ENOSF1Q7L5Y1 443 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 DEFB106AQ8N104 65 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 CCAR2Q8N163 923 aaKnown RBP14.97□□□□□ -0.01
SDC1-204ENST00000429035 AADATQ8N5Z0 425 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 KDM1BQ8NB78 822 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 C1orf131Q8NDD1 294 aaKnown RBP14.97□□□□□ -0.01
SDC1-204ENST00000429035 SERAC1Q96JX3 654 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 SYNCQ9H7C4 482 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 SLC25A13Q9UJS0 675 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 FZD4Q9ULV1 537 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 CNTN6Q9UQ52 1028 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 APC2O95996 2303 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3DA0A087WVF3 549 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3IA0A087WXS9 549 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3EA0A087X179 549 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3KA0A087X1G2 549 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 A0A1B0GTQ1 180 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 A0A1B0GVM2 712 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 FAM170AA1A519 330 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3FA6NER0 549 aaPredicted RBP14.96□□□□□ -0.01
SDC1-204ENST00000429035 TCAF2A6NFQ2 919 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 KCNU1A8MYU2 1149 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3LB9A6J9 549 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 PLK4O00444 970 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 VILLO15195 856 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 PCDHGA12O60330 932 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 IGLV3-25P01717 112 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 WNT1P04628 370 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3HP0C7X1 549 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 SLC9A1P19634 815 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 C5AR1P21730 350 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 CD38P28907 300 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 CCR1P32246 355 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 PPP2CBP62714 309 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 PPP2CAP67775 309 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 COL9A2Q14055 689 aaPredicted RBP14.96□□□□□ -0.01
SDC1-204ENST00000429035 ELAVL3Q14576 367 aaKnown RBP14.96□□□□□ -0.01
SDC1-204ENST00000429035 MEA1Q16626 185 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 SLC45A4Q5BKX6 768 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TTC39BQ5VTQ0 682 aaPredicted RBP14.96□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3GQ6DHY5 549 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3CQ6IPX1 549 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.96□□□□□ -0.01
SDC1-204ENST00000429035 GBP6Q6ZN66 633 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 FAM183BPQ6ZVS7 135 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 BEND5Q7L4P6 421 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TMPRSS7Q7RTY8 843 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 TBC1D3Q8IZP1 549 aaPredicted RBP14.96□□□□□ -0.01
SDC1-204ENST00000429035 GALNT15Q8N3T1 639 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 STK32AQ8WU08 396 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 PTPRN2Q92932 1015 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 CPXM1Q96SM3 734 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 ELF4Q99607 663 aaPredicted RBP14.96□□□□□ -0.01
SDC1-204ENST00000429035 EBF2Q9HAK2 575 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 GDF3Q9NR23 364 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.96□□□□□ -0.015e-8■■■□□ 15.1
SDC1-204ENST00000429035 VANGL2Q9ULK5 521 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 RAXQ9Y2V3 346 aa14.96□□□□□ -0.01
SDC1-204ENST00000429035 COL5A1P20908 1838 aaPredicted RBP14.95□□□□□ -0.02
SDC1-204ENST00000429035 BECN2A8MW95 431 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 CBX4O00257 560 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 DFNA5O60443 496 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 HSF2BPO75031 334 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 C7P10643 843 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 SLC2A3P11169 496 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 GOT1P17174 413 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 MAT2AP31153 395 aaKnown RBP14.95□□□□□ -0.02
SDC1-204ENST00000429035 MTIF2P46199 727 aaKnown RBP14.95□□□□□ -0.02
SDC1-204ENST00000429035 IRAK1P51617 712 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 METAP1P53582 386 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 SULT2A1Q06520 285 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 CAMK4Q16566 473 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 TPD52L1Q16890 204 aaPredicted RBP14.95□□□□□ -0.02
SDC1-204ENST00000429035 EXOC3L4Q17RC7 722 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 COL28A1Q2UY09 1125 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 DBX2Q6ZNG2 339 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 TMEM110Q86TL2 294 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 OR8D1Q8WZ84 308 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 CNDP2Q96KP4 475 aaKnown RBP14.95□□□□□ -0.02
SDC1-204ENST00000429035 PPP1R13BQ96KQ4 1090 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 FAM81BQ96LP2 452 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 NOX5Q96PH1 765 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 FAM129BQ96TA1 746 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 APEX2Q9UBZ4 518 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 ADAMTS1Q9UHI8 967 aa14.95□□□□□ -0.02
SDC1-204ENST00000429035 ANKRD11Q6UB99 2663 aaPredicted RBP14.95□□□□□ -0.02
SDC1-204ENST00000429035 TDRD6O60522 2096 aaKnown RBP14.94□□□□□ -0.02
SDC1-204ENST00000429035 DMXL2Q8TDJ6 3036 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 C1QTNF3-AMACRE9PGA6 284 aa14.94□□□□□ -0.02
SDC1-204ENST00000429035 ENC1O14682 589 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms