RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 UNC5AQ6ZN44 842 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 PRPF39Q86UA1 669 aaKnown RBP27.14■■□□□ 1.94
LDB1-202ENST00000425280 PDZD8Q8NEN9 1154 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 DCAKDQ8WVC6 231 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 ATXN2LQ8WWM7 1075 aaKnown RBP27.14■■□□□ 1.94
LDB1-202ENST00000425280 OVCA2Q8WZ82 227 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 ZNF512Q96ME7 567 aaPredicted RBP27.14■■□□□ 1.94
LDB1-202ENST00000425280 PPANQ9NQ55 473 aaKnown RBP27.14■■□□□ 1.94
LDB1-202ENST00000425280 YIPF1Q9Y548 306 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 KIAA1671Q9BY89 1806 aa27.14■■□□□ 1.94
LDB1-202ENST00000425280 IGLV3-10A0A075B6K4 115 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 MAFKO60675 156 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 C1QAP02745 245 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 GSTA2P09210 222 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 NFKB1P19838 968 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 MSH2P43246 934 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 SEC24CP53992 1094 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 RAB33AQ14088 237 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 SPARCL1Q14515 664 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 RAP1GAP2Q684P5 730 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 BCAS4Q8TDM0 211 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 CDK5RAP1Q96SZ6 601 aaKnown RBP27.13■■□□□ 1.93
LDB1-202ENST00000425280 PRMT1Q99873 361 aaKnown RBP27.13■■□□□ 1.93
LDB1-202ENST00000425280 TRIM56Q9BRZ2 755 aaKnown RBP27.13■■□□□ 1.93
LDB1-202ENST00000425280 ZYG11BQ9C0D3 744 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 INTS9Q9NV88 658 aaKnown RBP27.13■■□□□ 1.93
LDB1-202ENST00000425280 FNIP2Q9P278 1114 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 DOCK4Q8N1I0 1966 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 NYNRINQ9P2P1 1898 aaKnown RBP27.13■■□□□ 1.93
LDB1-202ENST00000425280 CARNS1A5YM72 827 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 CSH1P0DML2 217 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 CSH2P0DML3 217 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 RHOQP17081 205 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 KPNA1P52294 538 aaPredicted RBP27.13■■□□□ 1.93
LDB1-202ENST00000425280 C1QTNF8P60827 252 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 C16orf59Q7L2K0 433 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 NOL6Q9H6R4 1146 aaKnown RBP27.13■■□□□ 1.93
LDB1-202ENST00000425280 KCNK9Q9NPC2 374 aa27.13■■□□□ 1.93
LDB1-202ENST00000425280 ZNF840PA6NDX5 716 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 AP2A1O95782 977 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 KRT15P19012 456 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 ZSCAN26Q16670 478 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 FBXL22Q6P050 247 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 CNTD1Q8N815 330 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 MLPHQ9BV36 600 aaPredicted RBP27.12■■□□□ 1.93
LDB1-202ENST00000425280 PIH1D1Q9NWS0 290 aaKnown RBP27.12■■□□□ 1.93
LDB1-202ENST00000425280 DNMT3LQ9UJW3 386 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 HBS1LQ9Y450 684 aaKnown RBP27.12■■□□□ 1.93
LDB1-202ENST00000425280 ARHGAP42A6NI28 874 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 SDR42E2A6NKP2 422 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 TRDMT1O14717 391 aaKnown RBP27.12■■□□□ 1.93
LDB1-202ENST00000425280 CNTN5O94779 1100 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 SUN1O94901 812 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 CCNB1P14635 433 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 DNAJB2P25686 324 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 ATP5C1P36542 298 aaKnown RBP27.12■■□□□ 1.93
LDB1-202ENST00000425280 ALDH1A3P47895 512 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 MPP2Q14168 576 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 ALFQ53S48 1182 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 KCTD11Q693B1 232 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 TFAP2DQ7Z6R9 452 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 USP33Q8TEY7 942 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 IGSF8Q969P0 613 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 STAMBPL1Q96FJ0 436 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 TMEM248Q9NWD8 314 aa27.12■■□□□ 1.93
LDB1-202ENST00000425280 MGAT1P26572 445 aa27.11■■□□□ 1.93
LDB1-202ENST00000425280 PAPOLAP51003 745 aaKnown RBP27.11■■□□□ 1.93
LDB1-202ENST00000425280 KCNQ1P51787 676 aa27.11■■□□□ 1.93
LDB1-202ENST00000425280 SESN2P58004 480 aaPredicted RBP27.11■■□□□ 1.93
LDB1-202ENST00000425280 OLIG2Q13516 323 aa27.11■■□□□ 1.93
LDB1-202ENST00000425280 UMODL1-AS1Q8N2C9 162 aa27.11■■□□□ 1.93
LDB1-202ENST00000425280 SLC44A1Q8WWI5 657 aa27.11■■□□□ 1.93
LDB1-202ENST00000425280 MYRFLQ96LU7 910 aa27.11■■□□□ 1.93
LDB1-202ENST00000425280 TRABDQ9H4I3 376 aa27.11■■□□□ 1.93
LDB1-202ENST00000425280 PCDHA11Q9Y5I1 949 aa27.11■■□□□ 1.93
LDB1-202ENST00000425280 MATN3O15232 486 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 PRKCHP24723 683 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 CRADDP78560 199 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 NUGGCQ68CJ6 796 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 NADSYN1Q6IA69 706 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 GSDMBQ8TAX9 411 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 IL12RB2Q99665 862 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 DRGXA6NNA5 263 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 GJB5O95377 273 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 PPM1AP35813 382 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 HECTD3Q5T447 861 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 ACBD5Q5T8D3 534 aaPredicted RBP27.1■■□□□ 1.93
LDB1-202ENST00000425280 LRRC49Q8IUZ0 686 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 ARNTL2Q8WYA1 636 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 ZNF419Q96HQ0 510 aaPredicted RBP27.1■■□□□ 1.93
LDB1-202ENST00000425280 KIF9Q9HAQ2 790 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 MRPL17Q9NRX2 175 aaKnown RBP27.1■■□□□ 1.93
LDB1-202ENST00000425280 SENP1Q9P0U3 644 aa27.1■■□□□ 1.93
LDB1-202ENST00000425280 GOLGA6L7A0A1B0GV03 622 aa27.09■■□□□ 1.93
LDB1-202ENST00000425280 A0A1W2PPM1 405 aa27.09■■□□□ 1.93
LDB1-202ENST00000425280 GMNCA6NCL1 334 aa27.09■■□□□ 1.93
LDB1-202ENST00000425280 ERI2A8K979 691 aaKnown RBP27.09■■□□□ 1.93
LDB1-202ENST00000425280 ZBBXA8MT70 800 aa27.09■■□□□ 1.93
LDB1-202ENST00000425280 NDST2P52849 883 aa27.09■■□□□ 1.93
LDB1-202ENST00000425280 STEAP4Q687X5 459 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms