RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, human

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP3-205	ENST00000409810	CEP192	Q8TEP8	1941 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	MYO1F	O00160	1098 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	RPP40	O75818	363 aa	Known RBP	11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	CNTN5	O94779	1100 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	LMNA	P02545	664 aa	Known RBP	11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	EPHX1	P07099	455 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	RHOQ	P17081	205 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	CDC25B	P30305	580 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	L1CAM	P32004	1257 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	PCK1	P35558	622 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	ETFB	P38117	255 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	PXN	P49023	591 aa	Predicted RBP	11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	MAPKAPK2	P49137	400 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	IRAK1	P51617	712 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	ZNF135	P52742	658 aa	Predicted RBP	11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	PLK1	P53350	603 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	KRT83	P78385	493 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	ECT2L	Q008S8	904 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	DMWD	Q09019	674 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	RAB6C	Q53S08	254 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	ALF	Q53S48	1182 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	MANEAL	Q5VSG8	457 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	TFAP2D	Q7Z6R9	452 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	PSTK	Q8IV42	348 aa	Known RBP	11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	NIPA2	Q8N8Q9	360 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	MDGA1	Q8NFP4	955 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	GAB3	Q8WWW8	586 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	PANX2	Q96RD6	677 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	CHP1	Q99653	195 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	C2orf49	Q9BVC5	232 aa	Predicted RBP	11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	RAB6C	Q9H0N0	254 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	EPC1	Q9H2F5	836 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	CATSPERB	Q9H7T0	1116 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	MPP6	Q9NZW5	540 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	CTTNBP2NL	Q9P2B4	639 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	INTS6	Q9UL03	887 aa	Known RBP	11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	FZD10	Q9ULW2	581 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	RAD54B	Q9Y620	910 aa		11.21	□□□□□ -0.61
CHMP3-205	ENST00000409810	NUP205	Q92621	2012 aa		11.21	□□□□□ -0.62
CHMP3-205	ENST00000409810	SDK1	Q7Z5N4	2213 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810		A0A1W2PQF6	199 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	ILVBL	A1L0T0	632 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	FGF10	O15520	208 aa	Predicted RBP	11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	ZNF217	O75362	1048 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	LRCH4	O75427	683 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	LRIG2	O94898	1065 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	IPO7	O95373	1038 aa	Known RBP	11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	TMEM253	P0C7T8	217 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	PRKCH	P24723	683 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	MZF1	P28698	734 aa	Predicted RBP	11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	MIP	P30301	263 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	CYLC1	P35663	651 aa	Predicted RBP	11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	TPI1	P60174	286 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	ZNF252P-AS1	Q0IIN9	211 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	SIM2	Q14190	667 aa	Predicted RBP	11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	PTPRN	Q16849	979 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	ERMARD	Q5T6L9	678 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	PRR23B	Q6ZRT6	265 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	CCDC170	Q8IYT3	715 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	APCDD1	Q8J025	514 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	FEM1A	Q9BSK4	669 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	TMEM245	Q9H330	911 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	SPTLC3	Q9NUV7	552 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	TMEM248	Q9NWD8	314 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	IMPACT	Q9P2X3	320 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	INTU	Q9ULD6	942 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	USP18	Q9UMW8	372 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	AP4E1	Q9UPM8	1137 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	SMG5	Q9UPR3	1016 aa	Known RBP	11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	ERVW-1	Q9UQF0	538 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	FAM186A	A6NE01	2351 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	ABCA7	Q8IZY2	2146 aa		11.2	□□□□□ -0.62
CHMP3-205	ENST00000409810	WASH3P	C4AMC7	463 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	CREB3	O43889	395 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	ACADM	P11310	421 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	HLA-E	P13747	358 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	GABRG2	P18507	467 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	EPHB2	P29323	1055 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	HOXC13	P31276	330 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	VASP	P50552	380 aa	Predicted RBP	11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	CAMK2G	Q13555	558 aa	Predicted RBP	11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	SPA17	Q15506	151 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	HADH	Q16836	314 aa	Known RBP	11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	BOLA3	Q53S33	107 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	KIAA1211L	Q6NV74	962 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	KIAA1324	Q6UXG2	1013 aa	Known RBP	11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	TMTC1	Q8IUR5	882 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	RHOT2	Q8IXI1	618 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	DCAF4L2	Q8NA75	395 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	OR2T3	Q8NH03	318 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	ARHGEF26	Q96DR7	871 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	SNRNP25	Q9BV90	132 aa	Known RBP	11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	PACSIN1	Q9BY11	444 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	TPSD1	Q9BZJ3	242 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	TRIM7	Q9C029	511 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	DHX35	Q9H5Z1	703 aa	Known RBP	11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	PCSK1N	Q9UHG2	260 aa		11.19	□□□□□ -0.62
CHMP3-205	ENST00000409810	GMEB2	Q9UKD1	530 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms