RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 MCF2P10911 925 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 CKMT2P17540 419 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 RBL1P28749 1068 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 GNL1P36915 607 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 LAMC2Q13753 1193 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 FAM102AQ5T9C2 384 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 UGT2A3Q6UWM9 527 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 IFNEQ86WN2 208 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 C12orf56Q8IXR9 622 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 ATP6V1E2Q96A05 226 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 C18orf25Q96B23 403 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 ANKRD36BP1Q96IX9 119 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 FBXL18Q96ME1 805 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 BRD8Q9H0E9 1235 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 PRM3Q9NNZ6 103 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 RSL24D1Q9UHA3 163 aaKnown RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 PIN4Q9Y237 131 aaKnown RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 KIF13BQ9NQT8 1826 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 RNF103-CHMP3A0A140T963 221 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 RBM47A0AV96 593 aaKnown RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 FAM149AA5PLN7 773 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 H0YCG3 227 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 COQ9O75208 318 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 C22orf31O95567 290 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 CYP2C9P11712 490 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 ITGAXP20702 1163 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 NFKBIAP25963 317 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 CDKN2BP42772 138 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 MRPS5P82675 430 aaKnown RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 ITGADQ13349 1161 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 NFIL3Q16649 462 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 C15orf59Q2T9L4 293 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 CCDC92Q53HC0 331 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 MTX3Q5HYI7 312 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 PITRM1Q5JRX3 1037 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 MPZL3Q6UWV2 235 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 CXCL17Q6UXB2 119 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 SPATA6LQ8N4H0 392 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 ZNF276Q8N554 614 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 TMEM35BQ8NCS4 154 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 RIN3Q8TB24 985 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 TWNKQ96RR1 684 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 KCNK16Q96T55 309 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 PARK7Q99497 189 aaKnown RBP13.25□□□□□ -0.29
PTPRN-202ENST00000409251 CGRRF1Q99675 332 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 NPAS2Q99743 824 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 FOXP3Q9BZS1 431 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 SNX9Q9Y5X1 595 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 RLFQ13129 1914 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 PAPPA2Q9BXP8 1791 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 TPP1O14773 563 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 COX4I1P13073 169 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 ETV4P43268 484 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 MYBPC1Q00872 1141 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 TRIM32Q13049 653 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 PKP2Q99959 881 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 THAP1Q9NVV9 213 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 CAPN14A8MX76 684 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 KLHL2O95198 593 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 LDHAP00338 332 aaKnown RBP13.24□□□□□ -0.29
PTPRN-202ENST00000409251 MT-ND1P03886 318 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 CCDC166P0CW27 439 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 PHKA2P46019 1235 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 YAP1P46937 504 aaKnown RBP13.24□□□□□ -0.29
PTPRN-202ENST00000409251 HTRA3P83110 453 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 ZNF792Q3KQV3 632 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 OR6B2Q6IFH4 312 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 FAM47BQ8NA70 645 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 ZBTB8BQ8NAP8 495 aaPredicted RBP13.24□□□□□ -0.29
PTPRN-202ENST00000409251 CCNYQ8ND76 341 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 CCDC106Q9BWC9 280 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 CAB39LQ9H9S4 337 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 EBF1Q9UH73 591 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 DMTF1Q9Y222 760 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 A8MU76 341 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 ACKR2O00590 384 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 IGFBP6P24592 240 aaPredicted RBP13.24□□□□□ -0.29
PTPRN-202ENST00000409251 AVPR1AP37288 418 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 NUMBP49757 651 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 EFNA5P52803 228 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 BCAR1P56945 870 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 MBTD1Q05BQ5 628 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 CD300CQ08708 224 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 MYBPC2Q14324 1141 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 MAPK11Q15759 364 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 ZNF667Q5HYK9 610 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 KCNT2Q6UVM3 1135 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 NCCRP1Q6ZVX7 275 aaPredicted RBP13.24□□□□□ -0.29
PTPRN-202ENST00000409251 TLK2Q86UE8 772 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 FBXW8Q8N3Y1 598 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 TFB1MQ8WVM0 346 aaKnown RBP13.24□□□□□ -0.29
PTPRN-202ENST00000409251 NXF3Q9H4D5 531 aaKnown RBP13.24□□□□□ -0.29
PTPRN-202ENST00000409251 TBC1D23Q9NUY8 699 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 WDR27A2RRH5 827 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 BPGMP07738 259 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 NME3Q13232 169 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 GNASQ5JWF2 1037 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 LRRC8EQ6NSJ5 796 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 BRSK2Q8IWQ3 736 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 SLC7A5P1Q8MH63 180 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms