RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 OR8H1Q8NGG4 311 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SKA1Q96BD8 255 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 REXO5Q96IC2 774 aaKnown RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 L3MBTL3Q96JM7 780 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SLC9A7Q96T83 725 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 TCF12Q99081 682 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 MXRA8Q9BRK3 442 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 KLHL28Q9NXS3 571 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 TADA2AO75478 443 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SERPINA6P08185 405 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 RAB25P57735 213 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 ACOT1Q86TX2 421 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 ZNF518BQ9C0D4 1074 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SP140LQ9H930 580 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SCUBE2Q9NQ36 999 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 MCUBQ9NWR8 336 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 YWHAQP27348 245 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 ADSLP30566 484 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 CCDC157Q569K6 752 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 MTX3Q5HYI7 312 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 FAM13CQ8NE31 585 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 MNTQ99583 582 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 TRPV5Q9NQA5 729 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 TRIM17Q9Y577 477 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SPTLC1O15269 473 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 HARS2P49590 506 aaKnown RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 BAATQ14032 418 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SBK1Q52WX2 424 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 CRTC3Q6UUV7 619 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 RNASE11Q8TAA1 199 aaKnown RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 ZFYVE28Q9HCC9 887 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 GIN1Q9NXP7 522 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 TDRKHQ9Y2W6 561 aaKnown RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 MTF2Q9Y483 593 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SPEF1Q9Y4P9 236 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 LYNP07948 512 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 TXNP10599 105 aaKnown RBP12.04□□□□□ -0.48
SYNPO-202ENST00000394243 C6orf52Q5T4I8 152 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 FAM131AQ6UXB0 335 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 XPNPEP3Q9NQH7 507 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 C8orf4Q9NR00 106 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 DYRK1BQ9Y463 629 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 ACTL7BQ9Y614 415 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 CRTAMO95727 393 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 SERPINA1P01009 418 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 CDC42P60953 191 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 PQLC1Q8N2U9 271 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 OR56A4Q8NGH8 313 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 LRRC20Q8TCA0 184 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 TAS1R2Q8TE23 839 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 EEF1AKMT1Q8WVE0 214 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 NT5MQ9NPB1 228 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 GPRC5CQ9NQ84 441 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 DPP3Q9NY33 737 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 GGA3Q9NZ52 723 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 SLAIN2Q9P270 581 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 OGDHLQ9ULD0 1010 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 ERGIC3Q9Y282 383 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 CAPN8A6NHC0 703 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 GSC2O15499 205 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 NPTXRO95502 500 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 VDRP11473 427 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 PCSK1P29120 753 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 CIAPIN1Q6FI81 312 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 ZMYM2Q9UBW7 1377 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 CSDE1O75534 798 aaKnown RBP12.04□□□□□ -0.48
SYNPO-202ENST00000394243 UPP2O95045 317 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 NDUFB10O96000 172 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 C6orf222P0C671 652 aaPredicted RBP12.04□□□□□ -0.48
SYNPO-202ENST00000394243 GRK4P32298 578 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 TGFBR2P37173 567 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 GUCA1AP43080 201 aaPredicted RBP12.04□□□□□ -0.48
SYNPO-202ENST00000394243 COPZ1P61923 177 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 RIPK1Q13546 671 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 MFSD7Q6UXD7 560 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 VMP1Q96GC9 406 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 GSDMCQ9BYG8 508 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 PIDD1Q9HB75 910 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 S100A14Q9HCY8 104 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 PHF11Q9UIL8 331 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 LYVE1Q9Y5Y7 322 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 A0A1W2PQ72 361 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 NOS1APO75052 506 aaPredicted RBP12.04□□□□□ -0.48
SYNPO-202ENST00000394243 ITGB6P18564 788 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 S100A3P33764 101 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 MSX2P35548 267 aaPredicted RBP12.04□□□□□ -0.48
SYNPO-202ENST00000394243 BST1Q10588 318 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 ST3GAL1Q11201 340 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 RAB43Q86YS6 212 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 OFCC1Q8IZS5 231 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 KIAA0895Q8NCT3 520 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 ARL8BQ9NVJ2 186 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 ARHGAP28Q9P2N2 729 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 PPP2R3BQ9Y5P8 575 aa12.04□□□□□ -0.48
SYNPO-202ENST00000394243 KPNA5O15131 536 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ZC3H11AO75152 810 aaKnown RBP eCLIP12.03□□□□□ -0.48
SYNPO-202ENST00000394243 CYP7B1O75881 506 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 CST1P01037 141 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 ERVK-10P10266 1014 aa12.03□□□□□ -0.48
SYNPO-202ENST00000394243 PBLDP30039 288 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms