RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 APOL6Q9BWW8 343 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 NACA2Q9H009 215 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 MKS1Q9NXB0 559 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 LACTBL1A8MY62 500 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 CRTAMO95727 393 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 CST3P01034 146 aaPredicted RBP11.41□□□□□ -0.58
CUX1-204ENST00000393824 IFNB1P01574 187 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 ALDH2P05091 517 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 ATP6V1B1P15313 513 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 ATF7P17544 494 aaPredicted RBP11.41□□□□□ -0.58
CUX1-204ENST00000393824 ACO1P21399 889 aaKnown RBP11.41□□□□□ -0.58
CUX1-204ENST00000393824 IGFBP6P24592 240 aaPredicted RBP11.41□□□□□ -0.58
CUX1-204ENST00000393824 ACAT1P24752 427 aaKnown RBP11.41□□□□□ -0.58
CUX1-204ENST00000393824 MLH1P40692 756 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 EPHB1P54762 984 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 CHI3L2Q15782 390 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 CNGA3Q16281 694 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 TRIM60Q495X7 471 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 ATP13A4Q4VNC1 1196 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 PDCD4Q53EL6 469 aaKnown RBP11.41□□□□□ -0.58
CUX1-204ENST00000393824 PATL1Q86TB9 770 aaKnown RBP11.41□□□□□ -0.58
CUX1-204ENST00000393824 TICAM1Q8IUC6 712 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 SLC15A3Q8IY34 581 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 FBXW8Q8N3Y1 598 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 APBB2Q92870 758 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 EBF4Q9BQW3 602 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 MECRQ9BV79 373 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 MCOLN1Q9GZU1 580 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 PLGRKTQ9HBL7 147 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 KLK14Q9P0G3 267 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 AP4B1Q9Y6B7 739 aa11.41□□□□□ -0.58
CUX1-204ENST00000393824 hCG_1818297A0A087WSY0 165 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 TCRBV9S1A1TA0A576 114 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 TMEM191CA6NGB0 347 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 PI4K2BG5E9Z4 385 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 SPAG6O75602 509 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 C4BPAP04003 597 aaKnown RBP11.4□□□□□ -0.58
CUX1-204ENST00000393824 PROCP04070 461 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 KRT1P04264 644 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 TMEM191BP0C7N4 346 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 FAM58BPP0C7Q3 252 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 SRGAP2BP0DMP2 458 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 MCF2P10911 925 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 CDK9P50750 372 aaKnown RBP11.4□□□□□ -0.58
CUX1-204ENST00000393824 TLE2Q04725 743 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 C2CD6Q53TS8 623 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 TFDP3Q5H9I0 405 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 TTC39BQ5VTQ0 682 aaPredicted RBP11.4□□□□□ -0.58
CUX1-204ENST00000393824 NOTUMQ6P988 496 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 SLC27A1Q6PCB7 646 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 SLC39A5Q6ZMH5 540 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 NUDCD3Q8IVD9 361 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 CATSPER1Q8NEC5 780 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 LPPQ93052 612 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 ZFP42Q96MM3 310 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 PRPF18Q99633 342 aaKnown RBP11.4□□□□□ -0.58
CUX1-204ENST00000393824 C11orf70Q9BRQ4 267 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 C20orf27Q9GZN8 174 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 ZNF395Q9H8N7 513 aaPredicted RBP11.4□□□□□ -0.58
CUX1-204ENST00000393824 CACNG4Q9UBN1 327 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 RSL24D1Q9UHA3 163 aaKnown RBP11.4□□□□□ -0.58
CUX1-204ENST00000393824 PCDHGB4Q9UN71 923 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 USTQ9Y2C2 406 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 ZNF711Q9Y462 761 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 PCDHGB5Q9Y5G0 923 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 SZT2Q5T011 3432 aa11.4□□□□□ -0.58
CUX1-204ENST00000393824 BOLA2-SMG1P6H3BVE0 249 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 ITM2AO43736 263 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 NBNO60934 754 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 SORBS2O94875 1100 aaKnown RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 CAPNS1P04632 268 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 CALB1P05937 261 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 KITP10721 976 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 TBXAS1P24557 533 aaPredicted RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 ITGB8P26012 769 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 L1CAMP32004 1257 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 GJC1P36383 396 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 MTTPP55157 894 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 MRPS5P82675 430 aaKnown RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 CDC42EP1Q00587 391 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 PTPN11Q06124 597 aaPredicted RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 BBS9Q3SYG4 887 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 ZACNQ401N2 412 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 TWF2Q6IBS0 349 aaKnown RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 POTEHQ6S545 545 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 RSPH3Q86UC2 560 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 RTN4RL1Q86UN2 441 aaPredicted RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 SLC26A11Q86WA9 606 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 WDR75Q8IWA0 830 aaKnown RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 SCLYQ96I15 445 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 VPS50Q96JG6 964 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 NRDE2Q9H7Z3 1164 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 APOBEC3GQ9HC16 384 aaKnown RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 PNPLA8Q9NP80 782 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 THAP1Q9NVV9 213 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 MARCOQ9UEW3 520 aaPredicted RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 ZNF180Q9UJW8 692 aa11.4□□□□□ -0.59
CUX1-204ENST00000393824 FAF1Q9UNN5 650 aaPredicted RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 TDRKHQ9Y2W6 561 aaKnown RBP11.4□□□□□ -0.59
CUX1-204ENST00000393824 M0QZ92 97 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms