RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 RNF145Q96MT1 663 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 SH3GL2Q99962 352 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 C9orf16Q9BUW7 83 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 PAIP1Q9H074 479 aaKnown RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 PORCNQ9H237 461 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 ENTPD7Q9NQZ7 604 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 ETNK2Q9NVF9 386 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CYP39A1Q9NYL5 469 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CXCL11O14625 94 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CCNT2O60583 730 aaKnown RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 KPNA6O60684 536 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 ALDH1A2O94788 518 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 TSHRP16473 764 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 AKAP5P24588 427 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 PDK4Q16654 411 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 EXOC3L1Q86VI1 746 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 VSIG10LQ86VR7 867 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 LNX1Q8TBB1 728 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 OPTNQ96CV9 577 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 RERGLQ9H628 205 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 TMEM134Q9H6X4 195 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 A1CFQ9NQ94 594 aaKnown RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 TMEM51Q9NW97 253 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 PCDHB5Q9Y5E4 795 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 TOPAZ1Q8N9V7 1692 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 PEAK1Q9H792 1746 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 A0A0A0MRY4 1105 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 NOS2P35228 1153 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 GRK3P35626 688 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 RPL14P50914 215 aaKnown RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CLVS1Q8IUQ0 354 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 ADAM32Q8TC27 787 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 SPPL2AQ8TCT8 520 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 FIG4Q92562 907 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 SPATA13Q96N96 652 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 TBC1D10AQ9BXI6 508 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 NDEL1Q9GZM8 345 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 FAM192AQ9GZU8 254 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 IL22Q9GZX6 179 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 COPS7BQ9H9Q2 264 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 POPDC2Q9HBU9 364 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 ATP13A1Q9HD20 1204 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 SAE1Q9UBE0 346 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 LIMD1Q9UGP4 676 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 SLC25A13Q9UJS0 675 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CYP3A7-CYP3A51PA0A087WV96 503 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 A0A0B4J269 797 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 TTLL13PA6NNM8 815 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 LIASO43766 372 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 TSPAN3O60637 253 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 SNUPNO95149 360 aaKnown RBP11.63□□□□□ -0.55
PTPRF-203ENST00000372407 ALDH2P05091 517 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 ZNF286BP0CG31 522 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 HSMCR30P0CW71 290 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 MSH3P20585 1137 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 CYP3A7P24462 503 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 AXLP30530 894 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 RPL22P35268 128 aaKnown RBP11.63□□□□□ -0.55
PTPRF-203ENST00000372407 AMPD2Q01433 879 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 RNF43Q68DV7 783 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 BBS12Q6ZW61 710 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 ZNF410Q86VK4 478 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 SETD9Q8NE22 299 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 UTP15Q8TED0 518 aaKnown RBP11.63□□□□□ -0.55
PTPRF-203ENST00000372407 AGAP11Q8TF27 550 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 WNT8BQ93098 351 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 UGT2B28Q9BY64 529 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 ELOVL4Q9GZR5 314 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 ABHD16BQ9H3Z7 469 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 SH3BP4Q9P0V3 963 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 ASTN1O14525 1302 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 NCANO14594 1321 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 FSCN2O14926 492 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 TRIM24O15164 1050 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 PHGDHO43175 533 aaKnown RBP11.63□□□□□ -0.55
PTPRF-203ENST00000372407 VPS4BO75351 444 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 ATG7O95352 703 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 BNIPLQ7Z465 357 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 UNC93AQ86WB7 457 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 DNAJB3Q8WWF6 145 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 RORBQ92753 470 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 CDK5RAP1Q96SZ6 601 aaKnown RBP11.63□□□□□ -0.55
PTPRF-203ENST00000372407 MIEF1Q9NQG6 463 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 KANSL3Q9P2N6 904 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 FAM208AQ9UK61 1670 aaKnown RBP11.63□□□□□ -0.55
PTPRF-203ENST00000372407 SOCS7O14512 581 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 PEX1O43933 1283 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 URODP06132 367 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 PPP2R1BP30154 601 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 RAB27AP51159 221 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 RAB14P61106 215 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 MRPS22P82650 360 aaKnown RBP11.63□□□□□ -0.55
PTPRF-203ENST00000372407 CNTN2Q02246 1040 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 ZDHHC13Q8IUH4 622 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 PSTKQ8IV42 348 aaKnown RBP11.63□□□□□ -0.55
PTPRF-203ENST00000372407 SVOPQ8N4V2 548 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 HSFY1Q96LI6 401 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 DCUN1D5Q9BTE7 237 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 PADI4Q9UM07 663 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 C1orf232A0A0U1RR37 186 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms