RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ZYG11BQ9C0D3 744 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 RNF38Q9H0F5 515 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 EIF2B3Q9NR50 452 aaKnown RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 HBS1LQ9Y450 684 aaKnown RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 CHD9Q3L8U1 2897 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 LAMA3Q16787 3333 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 CHD5Q8TDI0 1954 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 C2orf78A6NCI8 922 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 MTSS1O43312 755 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 TGM5O43548 720 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 JCHAINP01591 159 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 RHOQP17081 205 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 CCNCP24863 283 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 PPP2R2AP63151 447 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 EXOC3L1Q86VI1 746 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 CIR1Q86X95 450 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-202ENST00000372405 UMODL1-AS1Q8N2C9 162 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 FBF1Q8TES7 1133 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 TEKT5Q96M29 485 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 CDK5RAP1Q96SZ6 601 aaKnown RBP14.12□□□□□ -0.15
PTPRF-202ENST00000372405 FERMT1Q9BQL6 677 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 ZNF334Q9HCZ1 680 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-202ENST00000372405 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.12□□□□□ -0.15
PTPRF-202ENST00000372405 TMEM248Q9NWD8 314 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 TRPM5Q9NZQ8 1165 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 TBK1Q9UHD2 729 aa14.12□□□□□ -0.15
PTPRF-202ENST00000372405 DRGXA6NNA5 263 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 CDH16O75309 829 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 OAS1P00973 400 aaKnown RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 C1QAP02745 245 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 IVLP07476 585 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 CREB1P16220 341 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 TSHRP16473 764 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 SLC6A4P31645 630 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 ELF1P32519 619 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 PAPOLAP51003 745 aaKnown RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 CDK16Q00536 496 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 GUCY1A3Q02108 690 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 SPARCL1Q14515 664 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 FAM133BQ5BKY9 247 aaKnown RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 NUGGCQ68CJ6 796 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 PSRC1Q6PGN9 363 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 SPRED2Q7Z698 418 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 PALM2Q8IXS6 379 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 ATPAF2Q8N5M1 289 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 HERVK_113Q902F9 699 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 MAML1Q92585 1016 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 WBP2Q969T9 261 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 PSMG2Q969U7 264 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 XPO6Q96QU8 1125 aaKnown RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 CCDC77Q9BR77 488 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 MLPHQ9BV36 600 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 GBA3Q9H227 469 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 ACSS3Q9H6R3 686 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 XAB2Q9HCS7 855 aaKnown RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 PIH1D1Q9NWS0 290 aaKnown RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 TRHDEQ9UKU6 1024 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 DOCK6Q96HP0 2047 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 TCRBV9S1A1TA0A576 114 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 POC1B-GALNT4F8VUJ3 575 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 ZNF189O75820 626 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 KLKB1P03952 638 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 NFKB1P19838 968 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 TACR2P21452 398 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 MMP13P45452 471 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 KPNA1P52294 538 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-202ENST00000372405 ERVFC1P60507 584 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 COG7P83436 770 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 KCTD11Q693B1 232 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 LRRC8BQ6P9F7 803 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 LILRA6Q6PI73 481 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 LRRC31Q6UY01 552 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 TDRPQ86YL5 185 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 USP33Q8TEY7 942 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 VAT1Q99536 393 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 RAD9AQ99638 391 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 IL12RB2Q99665 862 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 CAPS2Q9BXY5 557 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 IL21Q9HBE4 155 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 GKN1Q9NS71 199 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 RSPH14Q9UHP6 348 aa14.11□□□□□ -0.15
PTPRF-202ENST00000372405 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-202ENST00000372405 STC2O76061 302 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 PEX11BO96011 259 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 F11P03951 625 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 CCNB1P14635 433 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 DNAJB1P25685 340 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 CA8P35219 290 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 PHBP35232 272 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 VEPH1Q14D04 833 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 RFWD3Q6PCD5 774 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 OTOP3Q7RTS5 596 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 TADA2BQ86TJ2 420 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 CHSY1Q86X52 802 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 MDM1Q8TC05 714 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 ARHGEF2Q92974 986 aaKnown RBP14.1□□□□□ -0.15
PTPRF-202ENST00000372405 LRRC39Q96DD0 335 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 HMCESQ96FZ2 354 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 CFAP36Q96G28 342 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 RPRD1AQ96P16 312 aaPredicted RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms