RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 NRDE2Q9H7Z3 1164 aa3.75□□□□□ -1.81
MCF2-202ENST00000370573 CYP3A43Q9HB55 503 aa3.75□□□□□ -1.81
MCF2-202ENST00000370573 KCND1Q9NSA2 647 aa3.75□□□□□ -1.81
MCF2-202ENST00000370573 MKS1Q9NXB0 559 aa3.75□□□□□ -1.81
MCF2-202ENST00000370573 TRMT1Q9NXH9 659 aaKnown RBP3.75□□□□□ -1.81
MCF2-202ENST00000370573 GDAP2Q9NXN4 497 aa3.75□□□□□ -1.81
MCF2-202ENST00000370573 DNAJB4Q9UDY4 337 aa3.75□□□□□ -1.81
MCF2-202ENST00000370573 L1RE1Q9UN81 338 aa3.75□□□□□ -1.81
MCF2-202ENST00000370573 SNX9Q9Y5X1 595 aa3.75□□□□□ -1.81
MCF2-202ENST00000370573 COL4A6Q14031 1691 aa3.75□□□□□ -1.81
MCF2-202ENST00000370573 LAMA2P24043 3122 aaKnown RBP3.75□□□□□ -1.81
MCF2-202ENST00000370573 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 TMEM82A0PJX8 343 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CYB561D2O14569 222 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 TPP1O14773 563 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 AKR1B10O60218 316 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 DGKIO75912 1065 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 THBDP07204 575 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 MMEP08473 750 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 RHCEP18577 417 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 TNFAIP3P21580 790 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 LMO2P25791 158 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 PNPLA4P41247 253 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 ARHGAP25P42331 645 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CTSKP43235 329 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 SLC11A1P49279 550 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 AARSP49588 968 aaKnown RBP eCLIP3.74□□□□□ -1.81
MCF2-202ENST00000370573 NDST1P52848 882 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 WDR5P61964 334 aaKnown RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 TNNC1P63316 161 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CDR2Q01850 454 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 RHDQ02161 417 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 INCA1Q0VD86 236 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 FZD5Q13467 585 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 KIR3DS1Q14943 382 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 PAN2Q504Q3 1202 aaKnown RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 WSCD1Q658N2 575 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 DCLRE1AQ6PJP8 1040 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 ZNF365Q70YC5 407 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 OVCH1Q7RTY7 1134 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 PDCL2Q8N4E4 241 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 IPO4Q8TEX9 1081 aaKnown RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 ZNF606Q8WXB4 792 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 TOP1MTQ969P6 601 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 TEKT5Q96M29 485 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.74□□□□□ -1.81
MCF2-202ENST00000370573 DPEP3Q9H4B8 488 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CHST7Q9NS84 486 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 OXSMQ9NWU1 459 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 TAS2R14Q9NYV8 317 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 ZMYND8Q9ULU4 1186 aaPredicted RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 BARX2Q9UMQ3 279 aaPredicted RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 PCDHB12Q9Y5F1 795 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 PCDHA13Q9Y5I0 950 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 TIMM13Q9Y5L4 95 aaPredicted RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 NPFFR2Q9Y5X5 522 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 BZW2Q9Y6E2 419 aaKnown RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 LTBP2Q14767 1821 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 FNDC1Q4ZHG4 1894 aaPredicted RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 CEP290O15078 2479 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 FITM1A5D6W6 292 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CFAP69A5D8W1 941 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 M0QZQ0 153 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 NRP1O14786 923 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 SIGLEC6O43699 453 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 TACC1O75410 805 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 B3GAT3O94766 335 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 FGBP02675 491 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CCDC172P0C7W6 258 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 P4HA1P13674 534 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 WARSP23381 471 aaKnown RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 CYLC1P35663 651 aaPredicted RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 PBX3P40426 434 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 MAGEA1P43355 309 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 KPNA1P52294 538 aaPredicted RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 TERF1P54274 439 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 BPIFB4P59827 614 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 PDCD1Q15116 288 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 MAPRE1Q15691 268 aaKnown RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 SLC18A3Q16572 532 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CCDC142Q17RM4 750 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 DENND1BQ6P3S1 775 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CRTC3Q6UUV7 619 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CEP128Q6ZU80 1094 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 OTOP2Q7RTS6 562 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 PCGF5Q86SE9 256 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 ZNF605Q86T29 641 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 WDTC1Q8N5D0 677 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 CHST14Q8NCH0 376 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 URGCPQ8TCY9 931 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 HASPINQ8TF76 798 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 ATXN2LQ8WWM7 1075 aaKnown RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 TTC17Q96AE7 1141 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 ZNF689Q96CS4 500 aaPredicted RBP3.74□□□□□ -1.81
MCF2-202ENST00000370573 CYFIP2Q96F07 1278 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 TMEM176AQ96HP8 235 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 PPP1R13BQ96KQ4 1090 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 ZNF560Q96MR9 790 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 UROC1Q96N76 676 aa3.74□□□□□ -1.81
MCF2-202ENST00000370573 RTP3Q9BQQ7 232 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms