RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 RCN3Q96D15 328 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 OSBPL11Q9BXB4 747 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 TRIM38O00635 465 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 HDAC3O15379 428 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 GSTM1P09488 218 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 CCNA2P20248 432 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 NDST1P52848 882 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 MSLNQ13421 630 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 LRRC38Q5VT99 294 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 FGD2Q7Z6J4 655 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 HDHD2Q9H0R4 259 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 MSH3P20585 1137 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 CCR1P32246 355 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 FMO1Q01740 532 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 MGAT5BQ3V5L5 792 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 RASGEF1CQ8N431 466 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 METTL6Q8TCB7 284 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 SPOCK2Q92563 424 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 CLPBQ9H078 707 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 IPPQ9Y573 584 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 ASTN1O14525 1302 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 MYCP01106 439 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 MTTPP55157 894 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 BST2Q10589 180 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 SAPCD2Q86UD0 394 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 PDCD2LQ9BRP1 358 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 ATXN3LQ9H3M9 355 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 CLK4Q9HAZ1 481 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 BARX2Q9UMQ3 279 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 TBKBP1A7MCY6 615 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 SMIM22K7EJ46 135 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 WNT7AO00755 349 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 NEK3P51956 506 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 RBM15BQ8NDT2 890 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 SLC4A9Q96Q91 983 aa19.88■□□□□ 0.77
CCDC88B-202ENST00000356786 ANKRD63C9JTQ0 380 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 KATNA1O75449 491 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 ADSSP30520 456 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 HIRAP54198 1017 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 KLHL17Q6TDP4 642 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 C1orf186Q6ZWK4 172 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 DCP1BQ8IZD4 617 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 ZNF276Q8N554 614 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 ATP6V0D2Q8N8Y2 350 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 RP9Q8TA86 221 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 SHC3Q92529 594 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 TBCDQ9BTW9 1192 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 CCDC28BQ9BUN5 200 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 RGS18Q9NS28 235 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 CYBBP04839 570 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 EPHA3P29320 983 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 NPNTQ6UXI9 565 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 PCDHB8Q9UN66 801 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 UMODL1Q5DID0 1318 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 MGAT4DA6NG13 374 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 RBAK-RBAKDNI3L0D1 243 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 MAP3K13O43283 966 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 TSPAN3O60637 253 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 SNRPB2P08579 225 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 MSX2P35548 267 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 HIST2H2ACQ16777 129 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 HIST2H2AA3Q6FI13 130 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 ELMOD1Q8N336 334 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 HAS1Q92839 578 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 CLPTM1LQ96KA5 538 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 SPAG4Q9NPE6 437 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 EURLQ9NYK6 297 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 SALL4Q9UJQ4 1053 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 EFCAB10A6NFE3 127 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 ITGAVP06756 1048 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 TSHRP16473 764 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 HGSNATQ68CP4 663 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 PSMA8Q8TAA3 256 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 PTCD3Q96EY7 689 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 L3MBTL3Q96JM7 780 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 CLEC4MQ9H2X3 399 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 CDHR5Q9HBB8 845 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 DYRK4Q9NR20 520 aa19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 ABI2Q9NYB9 513 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-202ENST00000356786 ASTN2O75129 1339 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 TCRBV9S1A1TA0A576 114 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 TRIM43BA6NCK2 446 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 HARS2P49590 506 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 EPS8Q12929 822 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 AMER2Q8N7J2 671 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 CHST13Q8NET6 341 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 FBXO30Q8TB52 745 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 CHID1Q9BWS9 393 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 PRKD2Q9BZL6 878 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 ADAM30Q9UKF2 790 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 CDH9Q9ULB4 789 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 LYPLA1O75608 230 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 MICAL2O94851 1124 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 IFNA14P01570 189 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 ALOX15P16050 662 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 CHI3L1P36222 383 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 CCNG1P51959 295 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 CNTN1Q12860 1018 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 SLC1A5Q15758 541 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 ZNF57Q68EA5 555 aaPredicted RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms