RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 ARFGAP2Q8N6H7 521 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TTC9BQ8N6N2 239 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 ATAD1Q8NBU5 361 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 APBB2Q92870 758 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SERPINB12Q96P63 405 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TKTL2Q9H0I9 626 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 WDCPQ9H6R7 721 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 VPS37BQ9H9H4 285 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 NMUR1Q9HB89 426 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 NPHS2Q9NP85 383 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 RRN3Q9NYV6 651 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 NUDT5Q9UKK9 219 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 CLUHO75153 1309 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 KIAA0100Q14667 2235 aaKnown RBP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 GREB1Q4ZG55 1949 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 PLXNA3P51805 1871 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 A0A087WUV0 522 aaPredicted RBP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 E7ESA3 106 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 DCLK1O15075 740 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 AVILO75366 819 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TCEA3O75764 348 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SOAT2O75908 522 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 METTL18O95568 372 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 CXCL10P02778 98 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 ALDH2P05091 517 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 CREB1P16220 341 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 GCAP28676 217 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TLE2Q04725 743 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 FOXR1Q6PIV2 292 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 RSPO2Q6UXX9 243 aaPredicted RBP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 LEKR1Q6ZMV7 388 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TAS1R1Q7RTX1 841 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TRIM46Q7Z4K8 759 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 EXOC3L1Q86VI1 746 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 IGDCC3Q8IVU1 814 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 BCL7CQ8WUZ0 217 aaPredicted RBP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TFB1MQ8WVM0 346 aaKnown RBP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TTC25Q96NG3 672 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SELENOSQ9BQE4 189 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 ZCCHC2Q9C0B9 1178 aaKnown RBP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TBK1Q9UHD2 729 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SFMBT1Q9UHJ3 866 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 ZMYND8Q9ULU4 1186 aaPredicted RBP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 A0A1W2PQH9 124 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 SOBPA7XYQ1 873 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 F5H423 210 aaPredicted RBP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 CHADO15335 359 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 MSI1O43347 362 aaKnown RBP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 GCATO75600 419 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 F9P00740 461 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 IGLV3-25P01717 112 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 GALTP07902 379 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 ERCC2P18074 760 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 SSTR1P30872 391 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 LSP1P33241 339 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 AIF1P55008 147 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 TPI1P60174 286 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 AP1B1Q10567 949 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 STAT4Q14765 748 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 PAFAH1B3Q15102 231 aaKnown RBP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 ARL13BQ3SXY8 428 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 BTBD8Q5XKL5 378 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 HEATR6Q6AI08 1181 aaKnown RBP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 FUT10Q6P4F1 479 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 ANKRD33Q7Z3H0 272 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 AGGF1Q8N302 714 aaeCLIP9.49□□□□□ -0.893e-7■■■■□ 19.7
ATG4A-202ENST00000345734 FBXO36Q8NEA4 188 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 DIS3LQ8TF46 1054 aaKnown RBP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 PYROXD1Q8WU10 500 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 HTR3CQ8WXA8 447 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 CASP10Q92851 521 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 RNF34Q969K3 372 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 CCDC74AQ96AQ1 378 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 CEP41Q9BYV8 373 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 OSER1Q9NX31 292 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 DNMT3LQ9UJW3 386 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 PCDHGB7Q9Y5F8 929 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 EXOC1LA0A1B0GW35 172 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 C5orf60A6NFR6 353 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 POC1B-GALNT4F8VUJ3 575 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 XYLBO75191 536 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 PIAS1O75925 651 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 APRTP07741 180 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 FGFR3P22607 806 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 MMP13P45452 471 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 EIF4EBP2Q13542 120 aaPredicted RBP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 EFTUD2Q15029 972 aaKnown RBP eCLIP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 PRKD1Q15139 912 aaPredicted RBP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 NFE2Q16621 373 aaPredicted RBP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 RTP2Q5QGT7 225 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 PDIK1LQ8N165 341 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 NPWQ8N729 165 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 ARHGEF2Q92974 986 aaKnown RBP9.49□□□□□ -0.89
ATG4A-202ENST00000345734 CCDC77Q9BR77 488 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 KLC2Q9H0B6 622 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 PRDM12Q9H4Q4 367 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 ABCC13Q9NSE7 274 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 EURLQ9NYK6 297 aa9.49□□□□□ -0.89
ATG4A-202ENST00000345734 OR12D3Q9UGF7 316 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms