RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TTC31Q49AM3 519 aaPredicted RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 THEMIS2Q5TEJ8 643 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 MRPL10Q7Z7H8 261 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ZNF784Q8NCA9 323 aaPredicted RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 VPS37AQ8NEZ2 397 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SKA1Q96BD8 255 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PPP1R16AQ96I34 528 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 NPY6RQ99463 290 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 CDH19Q9H159 772 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ADAMTS10Q9H324 1103 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 NMRK1Q9NWW6 199 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 BCLAF3A2AJT9 711 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 YJEFN3A6XGL0 299 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 E7ENQ6 273 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SNUPNO95149 360 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 MAP3K6O95382 1288 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 HOXA11P31270 313 aaPredicted RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PPP4R4Q6NUP7 873 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TFAP2DQ7Z6R9 452 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ZNF516Q92618 1163 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 IGSF21Q96ID5 467 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 CELF6Q96J87 481 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TWNKQ96RR1 684 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TMEM109Q9BVC6 243 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 DCDC2Q9UHG0 476 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 BAIAP2L1Q9UHR4 511 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ENPP3O14638 875 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 STBD1O95210 358 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PGAM1P18669 254 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 CDKN2BP42772 138 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 MARCKSL1P49006 195 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SERPINH1P50454 418 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PEX5P50542 639 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 IRAK1P51617 712 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 WNT3AP56704 352 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 DDR2Q16832 855 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ATP13A4Q4VNC1 1196 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PDE12Q6L8Q7 609 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 CMTR2Q8IYT2 770 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 HEXDCQ8WVB3 486 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 E2F7Q96AV8 911 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 P2RY11Q96G91 374 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SCLYQ96I15 445 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TGS1Q96RS0 853 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 EBNA1BP2Q99848 306 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SEMA3CQ99985 751 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 EML4Q9HC35 981 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 GLOD4Q9HC38 313 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 VCX3AQ9NNX9 186 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 YIPF1Q9Y548 306 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 RGPD2P0DJD1 1756 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 A0A0G2JND7 137 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SYCE1LA8MT33 242 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 KCNU1A8MYU2 1149 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 DDHD2O94830 711 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 CCNB1P14635 433 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SLC8A1P32418 973 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ASPAP45381 313 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SERPINB8P50452 374 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PCSK7Q16549 785 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ADGRF1Q5T601 910 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 PIWIL4Q7Z3Z4 852 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 GIMAP7Q8NHV1 300 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 AENQ8WTP8 325 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 FAM118BQ9BPY3 351 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SLC13A1Q9BZW2 595 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 ATP13A3Q9H7F0 1226 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 WDR41Q9HAD4 459 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 SARS2Q9NP81 518 aaKnown RBP7.01□□□□□ -1.29
SF3B1-201ENST00000335508 RGS18Q9NS28 235 aa7.01□□□□□ -1.29
SF3B1-201ENST00000335508 TBC1D3BA6NDS4 549 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 C1QTNF3-AMACRE9PGA6 284 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 KPNA3O00505 521 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 TRIM13O60858 407 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 ADH1CP00326 375 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 GALTP07902 379 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 VCLP18206 1134 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 TPSB2P20231 275 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 AARSP49588 968 aaKnown RBP eCLIP7□□□□□ -1.29
SF3B1-201ENST00000335508 EIF2B5Q13144 721 aaKnown RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 TPSAB1Q15661 275 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 CLEC20AQ6ZU45 233 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 BTN2A1Q7KYR7 527 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 GSPT2Q8IYD1 628 aaKnown RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 C4orf33Q8N1A6 199 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 SH3KBP1Q96B97 665 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 ZNF599Q96NL3 588 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 CORO1BQ9BR76 489 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 TRMOQ9BU70 441 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 B3GNT5Q9BYG0 378 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 ILKAPQ9H0C8 392 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 TASP1Q9H6P5 420 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 KIAA1522Q9P206 1035 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 THSD7AQ9UPZ6 1657 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 H3BQF6 201 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 TM9SF1O15321 606 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 CYP2A6P11509 494 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 CCNCP24863 283 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 CXCR3P49682 368 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 TAS2R40P59535 323 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms