RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 TPRKBQ9Y3C4 175 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 SLC9A3R1O14745 358 aaPredicted RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 HS6ST1O60243 411 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 SEMA3DO95025 777 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 FGFR3P22607 806 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 CHI3L1P36222 383 aaPredicted RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 SHROOM1Q2M3G4 852 aaPredicted RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 NAPEPLDQ6IQ20 393 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 GPAT2Q6NUI2 795 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 C17orf99Q6UX52 265 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 RBM44Q6ZP01 1051 aaKnown RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 MARK2Q7KZI7 788 aaKnown RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 DHRSXQ8N5I4 330 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 TBC1D19Q8N5T2 526 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 RNF148Q8N7C7 305 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 PPP1R2P1Q96PQ5 205 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 MED15Q96RN5 788 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 CNPY3Q9BT09 278 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 SAR1AQ9NR31 198 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS41-202ENST00000310301 EHD3Q9NZN3 535 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 ATXN10Q9UBB4 475 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 NCF1BA6NI72 391 aaPredicted RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 NCF1CA8MVU1 366 aaPredicted RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 EIF3DO15371 548 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS41-202ENST00000310301 RNASEH1O60930 286 aaKnown RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 NCF1P14598 390 aaPredicted RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 CD44P16070 742 aaKnown RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 STIP1P31948 543 aaKnown RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 GTF2H1P32780 548 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 NRF1Q16656 503 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 CLEC16AQ2KHT3 1053 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 TTC27Q6P3X3 843 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 KRT77Q7Z794 578 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 SLC26A11Q86WA9 606 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 ZNF677Q86XU0 584 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 ELOA2Q8IYF1 753 aaPredicted RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 EID3Q8N140 333 aa8.35□□□□□ -1.07
VPS41-202ENST00000310301 AENQ8WTP8 325 aaKnown RBP8.35□□□□□ -1.07
VPS41-202ENST00000310301 UBDO15205 165 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 INPP4BO15327 924 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 BAIAP3O94812 1187 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 ITGBL1O95965 494 aaPredicted RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 ETS2P15036 469 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CDH3P22223 829 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 STARD3Q14849 445 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 PDK3Q15120 406 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 ZRANB3Q5FWF4 1079 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 TRIM65Q6PJ69 517 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CYP2R1Q6VVX0 501 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 IKBIPQ70UQ0 350 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 SLC24A5Q71RS6 500 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 EPHX4Q8IUS5 362 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 DENND6AQ8IWF6 608 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 GIPC3Q8TF64 312 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 FIG4Q92562 907 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 PPP1R10Q96QC0 940 aaKnown RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 PI4K2AQ9BTU6 479 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 UBXN6Q9BZV1 441 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 LACRTQ9GZZ8 138 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 TCF7L2Q9NQB0 619 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 WWOXQ9NZC7 414 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 POLG2Q9UHN1 485 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 GMEB1Q9Y692 573 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 EFCAB10A6NFE3 127 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 ZSCAN5CA6NGD5 496 aaPredicted RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 P4HA2O15460 535 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 LDLRP01130 860 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CKMP06732 381 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 PSMA3P25788 255 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 MZF1P28698 734 aaPredicted RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 MTA1Q13330 715 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 BMPR2Q13873 1038 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 USP41Q3LFD5 358 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 ALFQ53S48 1182 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 ATAD3BQ5T9A4 648 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 TMC3Q7Z5M5 1100 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 KRT78Q8N1N4 520 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 WDR48Q8TAF3 677 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 C9orf16Q9BUW7 83 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 ABCB10Q9NRK6 738 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CROTQ9UKG9 612 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 GTF2A1LQ9UNN4 478 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 UBIAD1Q9Y5Z9 338 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 SMIM31A0A1B0GVY4 71 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 EXTL3O43909 919 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 HLA-DRAP01903 254 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 GSSP48637 474 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 HK2P52789 917 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 ABATP80404 500 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CDK16Q00536 496 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CCDC153Q494R4 210 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 TTMPQ5BVD1 217 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CRELD2Q6UXH1 353 aaPredicted RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 VN1R5Q7Z5H4 357 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 YTHDF3Q7Z739 585 aaKnown RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 SLC44A2Q8IWA5 706 aaPredicted RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 POC5Q8NA72 575 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 TSPAN14Q8NG11 270 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms