RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SND1Q7KZF4 910 aaKnown RBP eCLIP20.11■□□□□ 0.81
LIME1-201ENST00000309546 NOP9Q86U38 636 aaKnown RBP20.11■□□□□ 0.81
LIME1-201ENST00000309546 ERICH1Q86X53 443 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 NAXDQ8IW45 347 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 STK40Q8N2I9 435 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 GBP4Q96PP9 640 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 NPY6RQ99463 290 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 STK33Q9BYT3 514 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 TKTL2Q9H0I9 626 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 RRN3Q9NYV6 651 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 PCDHB9Q9Y5E1 797 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 CHD8Q9HCK8 2581 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.1■□□□□ 0.81
LIME1-201ENST00000309546 TPM2P07951 284 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 MMEP08473 750 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 VAV1P15498 845 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 SLC8A1P32418 973 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 KLK7P49862 253 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 AFF3P51826 1226 aaKnown RBP20.1■□□□□ 0.81
LIME1-201ENST00000309546 OXCT1P55809 520 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 DEUP1Q05D60 604 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 SULT2A1Q06520 285 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 SFSWAPQ12872 951 aaKnown RBP20.1■□□□□ 0.81
LIME1-201ENST00000309546 MTA1Q13330 715 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 ZNF177Q13360 481 aaPredicted RBP20.1■□□□□ 0.81
LIME1-201ENST00000309546 TEAD4Q15561 434 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 KIAA0895LQ68EN5 471 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 LAYNQ6UX15 382 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 C14orf80Q86SX3 495 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 XYLT1Q86Y38 959 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 MSANTD4Q8NCY6 345 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 OR52K2Q8NGK3 314 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 C1orf216Q8TAB5 229 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 ENOX1Q8TC92 643 aaKnown RBP20.1■□□□□ 0.81
LIME1-201ENST00000309546 GPT2Q8TD30 523 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 PTPRN2Q92932 1015 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 SCNM1Q9BWG6 230 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 ADAM33Q9BZ11 813 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 GANQ9H2C0 597 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 WDCPQ9H6R7 721 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 TM9SF3Q9HD45 589 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 SLC25A13Q9UJS0 675 aa20.1■□□□□ 0.81
LIME1-201ENST00000309546 FNDC3AQ9Y2H6 1198 aaKnown RBP20.1■□□□□ 0.81
LIME1-201ENST00000309546 CACNA1BQ00975 2339 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 HYAL3O43820 417 aaPredicted RBP20.09■□□□□ 0.81
LIME1-201ENST00000309546 GFPT2O94808 682 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 ADCY5O95622 1261 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 IL1BP01584 269 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 CD27P26842 260 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 GABRB2P47870 512 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 PLK1P53350 603 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 ELAVL3Q14576 367 aaKnown RBP20.09■□□□□ 0.81
LIME1-201ENST00000309546 KRT31Q15323 416 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 HLA-BQ31612 363 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 ACCSLQ4AC99 568 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 BRMS1LQ5PSV4 323 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 NAA35Q5VZE5 725 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 ADAT2Q7Z6V5 191 aaKnown RBP20.09■□□□□ 0.81
LIME1-201ENST00000309546 EPS8L1Q8TE68 723 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 SETD7Q8WTS6 366 aaKnown RBP20.09■□□□□ 0.81
LIME1-201ENST00000309546 CPA5Q8WXQ8 436 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 PPP1R9BQ96SB3 815 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 TBCBQ99426 244 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 NEUROG2Q9H2A3 272 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 ANLNQ9NQW6 1124 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 TM7SF3Q9NS93 570 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 FAM207AQ9NSI2 230 aaPredicted RBP20.09■□□□□ 0.81
LIME1-201ENST00000309546 VPS28Q9UK41 221 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 WASF3Q9UPY6 502 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 SNX10Q9Y5X0 201 aa20.09■□□□□ 0.81
LIME1-201ENST00000309546 C1QTNF9BB2RNN3 333 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 KRT37O76014 449 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 LSM8O95777 96 aaKnown RBP20.08■□□□□ 0.81
LIME1-201ENST00000309546 ADH1BP00325 375 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 IGHV4-34P06331 123 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 C1QTNF9P0C862 333 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 FLT3P36888 993 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 CXCR3P49682 368 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 GALCP54803 685 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 HNRNPDQ14103 355 aaKnown RBP20.08■□□□□ 0.81
LIME1-201ENST00000309546 TRIP6Q15654 476 aaKnown RBP20.08■□□□□ 0.81
LIME1-201ENST00000309546 KIF19Q2TAC6 998 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 FKBP15Q5T1M5 1219 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 CDKAL1Q5VV42 579 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 NCEH1Q6PIU2 408 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 UNQ6494/PRO21346Q6UXR6 183 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 SLC20A1Q8WUM9 679 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 FAM129BQ96TA1 746 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 MUC3BQ9H195 1237 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 NLRC4Q9NPP4 1024 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 ARHGEF38Q9NXL2 777 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 FZD4Q9ULV1 537 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 PAXBP1Q9Y5B6 917 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 SNX11Q9Y5W9 270 aa20.08■□□□□ 0.81
LIME1-201ENST00000309546 LRRC72A6NJI9 287 aa20.07■□□□□ 0.8
LIME1-201ENST00000309546 BNIP3LO60238 219 aa20.07■□□□□ 0.8
LIME1-201ENST00000309546 CLDN11O75508 207 aa20.07■□□□□ 0.8
LIME1-201ENST00000309546 CNTN5O94779 1100 aa20.07■□□□□ 0.8
LIME1-201ENST00000309546 F9P00740 461 aa20.07■□□□□ 0.8
LIME1-201ENST00000309546 RHOCP08134 193 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms