RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 EFTUD2Q15029 972 aaKnown RBP eCLIP11.16□□□□□ -0.62
LSM3-201ENST00000306024 CCNG2Q16589 344 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 KIAA2013Q8IYS2 634 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 SREK1Q8WXA9 508 aaKnown RBP11.16□□□□□ -0.62
LSM3-201ENST00000306024 CMTM5Q96DZ9 223 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 BTBD9Q96Q07 612 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 OXCT2Q9BYC2 517 aaPredicted RBP11.16□□□□□ -0.62
LSM3-201ENST00000306024 EPS15L1Q9UBC2 864 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 GRID1Q9ULK0 1009 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 GPC6Q9Y625 555 aaPredicted RBP11.16□□□□□ -0.62
LSM3-201ENST00000306024 TRIM49D1C9J1S8 452 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 FBP2O00757 339 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 DNALI1O14645 258 aaPredicted RBP11.15□□□□□ -0.62
LSM3-201ENST00000306024 S100A1P23297 94 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 HOXA11P31270 313 aaPredicted RBP11.15□□□□□ -0.62
LSM3-201ENST00000306024 CYP2C18P33260 490 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 GNL1P36915 607 aaPredicted RBP11.15□□□□□ -0.62
LSM3-201ENST00000306024 NXNQ6DKJ4 435 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 ACOT1Q86TX2 421 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 SHC3Q92529 594 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 TRIM11Q96F44 468 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 COPS7BQ9H9Q2 264 aaPredicted RBP11.15□□□□□ -0.62
LSM3-201ENST00000306024 SIX2Q9NPC8 291 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 TIMM13Q9Y5L4 95 aaPredicted RBP11.15□□□□□ -0.62
LSM3-201ENST00000306024 PLXNA1Q9UIW2 1896 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 TMEM221A6NGB7 291 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 CYB561D2O14569 222 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 BIRC5O15392 142 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 WNT7BP56706 349 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 MRPS22P82650 360 aaKnown RBP11.15□□□□□ -0.62
LSM3-201ENST00000306024 OR6B2Q6IFH4 312 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 DNAJC24Q6P3W2 148 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 DENND1AQ8TEH3 1009 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 ATP2A3Q93084 1043 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 FAM149B1Q96BN6 582 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 TNIP3Q96KP6 325 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 OSBPL6Q9BZF3 934 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 COQ4Q9Y3A0 265 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 PTPRJQ12913 1337 aa11.15□□□□□ -0.62
LSM3-201ENST00000306024 APOEP02649 317 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 GRIA2P42262 883 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 SLC5A3P53794 718 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 VCPP55072 806 aaKnown RBP11.15□□□□□ -0.63
LSM3-201ENST00000306024 BST1Q10588 318 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 TAF12Q16514 161 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 TRIM60Q495X7 471 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 C1orf220Q5T0J3 134 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 PPP1R2P3Q6NXS1 205 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 TRIM72Q6ZMU5 477 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 THEM5Q8N1Q8 247 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 FBXO36Q8NEA4 188 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 HELQQ8TDG4 1101 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 PRICKLE1Q96MT3 831 aaPredicted RBP11.15□□□□□ -0.63
LSM3-201ENST00000306024 GPATCH1Q9BRR8 931 aaKnown RBP11.15□□□□□ -0.63
LSM3-201ENST00000306024 FTHL17Q9BXU8 183 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 ARMC7Q9H6L4 198 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 FADS3Q9Y5Q0 445 aa11.15□□□□□ -0.63
LSM3-201ENST00000306024 CASP8AP2Q9UKL3 1982 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 A0A0G2JMZ2 1700 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 KPNA7A9QM74 516 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 ETS1P14921 441 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 TCN1P20061 433 aaPredicted RBP11.14□□□□□ -0.63
LSM3-201ENST00000306024 MAP4P27816 1152 aaKnown RBP11.14□□□□□ -0.63
LSM3-201ENST00000306024 STT3AP46977 705 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 HSPA13P48723 471 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 ART3Q13508 389 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 RALGPS1Q5JS13 557 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 C6orf52Q5T4I8 152 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 LHX8Q68G74 356 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 SLC24A5Q71RS6 500 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 LINC01465Q8N7H1 131 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 FBXO27Q8NI29 283 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 SNX27Q96L92 541 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 MECRQ9BV79 373 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 CYP3A43Q9HB55 503 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 LRRC4Q9HBW1 653 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 TRPC7Q9HCX4 862 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 PTPRHQ9HD43 1115 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 TXNDC16Q9P2K2 825 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 HSFX1Q9UBD0 423 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 GIT1Q9Y2X7 761 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 LOXHD1Q8IVV2 1947 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 ZMPSTE24O75844 475 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 VNN1O95497 513 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 NDST1P52848 882 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 PDK1Q15118 436 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 ZCCHC23Q6ZST2 131 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 NOP9Q86U38 636 aaKnown RBP11.14□□□□□ -0.63
LSM3-201ENST00000306024 HPS6Q86YV9 775 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 PQLC1Q8N2U9 271 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 SCAIQ8N9R8 606 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 C12orf50Q8NA57 414 aaPredicted RBP11.14□□□□□ -0.63
LSM3-201ENST00000306024 TTC13Q8NBP0 860 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 WNT8BQ93098 351 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 SKA1Q96BD8 255 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 CCDC138Q96M89 665 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 PIK3R2O00459 728 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 EEF1B2P24534 225 aaKnown RBP11.14□□□□□ -0.63
LSM3-201ENST00000306024 NEK2P51955 445 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 NRF1Q16656 503 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms