RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FAM162AQ96A26 154 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 EDC3Q96F86 508 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 KCTD15Q96SI1 283 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TTYH3Q9C0H2 523 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 IL22Q9GZX6 179 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 SLC24A3Q9HC58 644 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TJP2Q9UDY2 1190 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 IPPQ9Y573 584 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ASB14A6NK59 587 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 H0YAE9 185 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 RIMBP2O15034 1052 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 FGF10O15520 208 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-201ENST00000303395 RGS10O43665 173 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 PLEKHA8P1O95397 391 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 LYNP07948 512 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 COMTP21964 271 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 FGFR3P22607 806 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 RGS8P57771 180 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-201ENST00000303395 CDH17Q12864 832 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 HIST2H2ACQ16777 129 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-201ENST00000303395 C4orf46Q504U0 113 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 LRRC55Q6ZSA7 311 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 ANKMY2Q8IV38 441 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 ARID3BQ8IVW6 561 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-201ENST00000303395 C4orf19Q8IY42 314 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 PPM1NQ8N819 430 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 SETD6Q8TBK2 473 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 GDPD5Q8WTR4 605 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 HEXDCQ8WVB3 486 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 ZBTB9Q96C00 473 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 HAVCR1Q96D42 359 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 MCRS1Q96EZ8 462 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 MNTQ99583 582 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 H2AFJQ9BTM1 129 aa5.34□□□□□ -1.56
SCN1A-201ENST00000303395 C19orf81C9J6K1 198 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TOM1O60784 492 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SOX30O94993 753 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ITGB6P18564 788 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ATF4P18848 351 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 HOXD10P28358 340 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 BTDP43251 543 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 MAGEA10P43363 369 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 RENBPP51606 427 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ALDH18A1P54886 795 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF33BQ06732 778 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ARMC4Q5T2S8 1044 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CDC73Q6P1J9 531 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 GDPGP1Q6ZNW5 385 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 RAB11FIP2Q7L804 512 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CLNKQ7Z7G1 428 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 HIPK1Q86Z02 1210 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CLEC4FQ8N1N0 589 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 GAL3ST3Q96A11 431 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SLC35C1Q96A29 364 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 LRRC4BQ9NT99 713 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 KLHL8Q9P2G9 620 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 MAPK8IP1Q9UQF2 711 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TRIM17Q9Y577 477 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 A0A1W2PQ67 120 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 KPNA5O15131 536 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CLDN3O15551 220 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CFBP00751 764 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ENO2P09104 434 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SKP1P63208 163 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ALDH6A1Q02252 535 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ALG11Q2TAA5 492 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 RBM48Q5RL73 367 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 LMBRD2Q68DH5 695 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SNX32Q86XE0 403 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ETNPPLQ8TBG4 499 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SLC9A7Q96T83 725 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TMEM120AQ9BXJ8 343 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 EXO5Q9H790 373 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF696Q9H7X3 374 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 NOL11Q9H8H0 719 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ARHGAP20Q9P2F6 1191 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CHORDC1Q9UHD1 332 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 DNAJC13O75165 2243 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 UBDO15205 165 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 VAPBO95292 243 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TRAPPC2P0DI81 140 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TRAPPC2BP0DI82 140 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CBX5P45973 191 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 RPL14P50914 215 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 PDK3Q15120 406 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ZYXQ15942 572 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SYT16Q17RD7 645 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ZBED5Q49AG3 693 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 STOX1Q6ZVD7 989 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 OR7A2PQ8NGA2 310 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 PPP1R16AQ96I34 528 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CGRRF1Q99675 332 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SERHL2Q9H4I8 314 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 RIBC2Q9H4K1 309 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TRIM36Q9NQ86 728 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SERHLQ9NQF3 203 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 HSPBP1Q9NZL4 362 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 COPZ2Q9P299 210 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 GSTK1Q9Y2Q3 226 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 MYH3P11055 1940 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms