RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SCUBE2Q9NQ36 999 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 MCUBQ9NWR8 336 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 UBDO15205 165 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 HPGDP15428 266 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 ALDH5A1P51649 535 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 ELF3P78545 371 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 ACAP1Q15027 740 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 YAF2Q8IY57 180 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 CHST12Q9NRB3 414 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 SLCO1B7G3V0H7 640 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 PSIP1O75475 530 aaKnown RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 PDGFRBP09619 1106 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 HPCAL1P37235 193 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 DRG2P55039 364 aaKnown RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 FUKQ8N0W3 1084 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 MED8Q96G25 268 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 INPP4AQ96PE3 977 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 NAT9Q9BTE0 207 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 ADI1Q9BV57 179 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 DNAJC18Q9H819 358 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 SLC9A9Q8IVB4 645 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 ARMC7Q9H6L4 198 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 FBXO28Q9NVF7 368 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 CCDC154A6NI56 674 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 ST8SIA6P61647 398 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 TRIM48Q8IWZ4 208 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 SLC9A7Q96T83 725 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 NINJ2Q9NZG7 142 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 ANKRD36CQ5JPF3 1778 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 UBE2QL1A1L167 161 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 DDTLA6NHG4 134 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 TCF7P36402 384 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 GJA8P48165 433 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 IRF2BP1Q8IU81 584 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 BHLHE22Q8NFJ8 381 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 DOLKQ9UPQ8 538 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 POLR1DQ9Y2S0 133 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 FECHP22830 423 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 TAF5Q15542 800 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 RASSF6Q6ZTQ3 369 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 SV2AQ7L0J3 742 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 CENPIQ92674 756 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 FAM136AQ96C01 138 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 TBCBQ99426 244 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 COPS7BQ9H9Q2 264 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 SAR1AQ9NR31 198 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 GPRC5DQ9NZD1 345 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 SLC25A27O95847 323 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 GH1P01241 217 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 GPR1P46091 355 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 FASTKQ14296 549 aaKnown RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 OLFML2AQ68BL7 652 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 MAP4K3Q8IVH8 894 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 FNIP1Q8TF40 1166 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 DDX4Q9NQI0 724 aaKnown RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 WNT7AO00755 349 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 RBP1P09455 135 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 DSG3P32926 999 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 SAMD4BQ5PRF9 694 aaKnown RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PERM1Q5SV97 790 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 MRNIPQ6NTE8 343 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 MZT2AQ6P582 158 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 UTS2BQ765I0 119 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 FAM71AQ8IYT1 594 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 CISHQ9NSE2 258 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 DPP3Q9NY33 737 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 TRPC4Q9UBN4 977 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PIN4Q9Y237 131 aaKnown RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PLIN4Q96Q06 1357 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 NOTUMQ6P988 496 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 EPS8L1Q8TE68 723 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 IDI2Q9BXS1 227 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 TTYH3Q9C0H2 523 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 ELOVL6Q9H5J4 265 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 NUDT5Q9UKK9 219 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 WBP11Q9Y2W2 641 aaKnown RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 STARD13Q9Y3M8 1113 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 HMBSP08397 361 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 GPR162Q16538 588 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 FBXO42Q6P3S6 717 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 RNF19BQ6ZMZ0 732 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 ZNF572Q7Z3I7 529 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 TMPRSS6Q8IU80 811 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 GLIS3Q8NEA6 775 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 ETNPPLQ8TBG4 499 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 OTUD5Q96G74 571 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 RNF145Q96MT1 663 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 LRRC4BQ9NT99 713 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 RSL24D1Q9UHA3 163 aaKnown RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PHF11Q9UIL8 331 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 NDUFB5O43674 189 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 HBP1O60381 514 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 ITGB3P05106 788 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 NAB1Q13506 487 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 NR6A1Q15406 480 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 RASGEF1CQ8N431 466 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 MKL1Q969V6 931 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 CYP3A43Q9HB55 503 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PRKAR1AP10644 381 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 OAZ1P54368 228 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms