RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 WWP1Q9H0M0 922 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 CAB39LQ9H9S4 337 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 CHRAC1Q9NRG0 131 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 THAP1Q9NVV9 213 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 BFARQ9NZS9 450 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 DNAJC16Q9Y2G8 782 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 BPTFQ12830 3046 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 JCHAINP01591 159 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 FAM163BP0C2L3 166 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 TPBGLP0DKB5 382 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 GP5P40197 560 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 GARSP41250 739 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 PPP2R5DQ14738 602 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 HSP90AA5PQ58FG0 334 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 SPANXN3Q5MJ09 141 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 RSPH3Q86UC2 560 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 RASAL3Q86YV0 1011 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 SMC1BQ8NDV3 1235 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 ACMSDQ8TDX5 336 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 LRRC40Q9H9A6 602 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 SNX15Q9NRS6 342 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 PTCH2Q9Y6C5 1203 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 DUSP11O75319 330 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 YY1P25490 414 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 PCSK1P29120 753 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 ELF1P32519 619 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 THPOP40225 353 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 SLC1A6P48664 564 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 CXCR3P49682 368 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 AIF1P55008 147 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 UBAP2LQ14157 1087 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 DLG2Q15700 870 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 TEDDM1Q5T9Z0 273 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 ARHGAP36Q6ZRI8 547 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 LRRTM3Q86VH5 581 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 TNS4Q8IZW8 715 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 PLD6Q8N2A8 252 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 PGAP3Q96FM1 320 aaPredicted RBP18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 EPAS1Q99814 870 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 DCDC2Q9UHG0 476 aa18.77■□□□□ 0.6
SHKBP1-201ENST00000291842 ZCWPW2A0A1B0GU75 182 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 ARHGAP42A6NI28 874 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 CAPN14A8MX76 684 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 B2RBV5 119 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 PGGT1BP53609 377 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 KPNB1Q14974 876 aaKnown RBP18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 WASHC2DQ5SRD0 308 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 OTOP3Q7RTS5 596 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 RAB3IL1Q8TBN0 382 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 GBA3Q9H227 469 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 PADI3Q9ULW8 664 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 GIT1Q9Y2X7 761 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 TRPM7Q96QT4 1865 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 DFFAO00273 331 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 ITGB1P05556 798 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 GNAZP19086 355 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 CDC25CP30307 473 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 ARRB2P32121 409 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 HCAR3P49019 387 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 GALNT2Q10471 571 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 ANKRD20A4Q4UJ75 823 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 KCTD11Q693B1 232 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 FSTL4Q6MZW2 842 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 PLCD3Q8N3E9 789 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 TEX9Q8N6V9 391 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 ACVR1CQ8NER5 493 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 OR10T2Q8NGX3 314 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 HDAC11Q96DB2 347 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 RSRC1Q96IZ7 334 aaKnown RBP18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 CPNE1Q99829 537 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 CASS4Q9NQ75 786 aa18.76■□□□□ 0.59
SHKBP1-201ENST00000291842 NCAM2O15394 837 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 F9P00740 461 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 PROCP04070 461 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 ODC1P11926 461 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 PGFP49763 221 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 SESN3P58005 492 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 DQX1Q8TE96 717 aaKnown RBP18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 WDR60Q8WVS4 1066 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 RBBP8Q99708 897 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 CSNK1G1Q9HCP0 422 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 CHST12Q9NRB3 414 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 PNPOQ9NVS9 261 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 NUDT5Q9UKK9 219 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 PRR5-ARHGAP8B1AHC4 643 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 CAPN15O75808 1086 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 MX2P20592 715 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 ERFP50548 548 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 ARHGAP8P85298 464 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 IRF9Q00978 393 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 NAB1Q13506 487 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 GRTP1Q5TC63 336 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 TMEM135Q86UB9 458 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 SERINC5Q86VE9 423 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 SPATA22Q8NHS9 363 aa18.75■□□□□ 0.59
SHKBP1-201ENST00000291842 C20orf96Q9NUD7 363 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms