RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 SORCS3Q9UPU3 1222 aa11.78□□□□□ -0.52
VPS33A-201ENST00000267199 TIMM13Q9Y5L4 95 aaPredicted RBP11.78□□□□□ -0.52
VPS33A-201ENST00000267199 TNPO2O14787 897 aaKnown RBP11.77□□□□□ -0.52
VPS33A-201ENST00000267199 CHADO15335 359 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 MTA2O94776 668 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 ATXN8OSP0DMR3 200 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 NEK3P51956 506 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 AQP4P55087 323 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 TRIM25Q14258 630 aaKnown RBP11.77□□□□□ -0.52
VPS33A-201ENST00000267199 CCDC153Q494R4 210 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 ZC3H12AQ5D1E8 599 aaKnown RBP11.77□□□□□ -0.52
VPS33A-201ENST00000267199 C6orf52Q5T4I8 152 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 FAM183BPQ6ZVS7 135 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 C10orf107Q8IVU9 208 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 C12orf50Q8NA57 414 aaPredicted RBP11.77□□□□□ -0.52
VPS33A-201ENST00000267199 EDEM1Q92611 657 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 LRRC39Q96DD0 335 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 PHF12Q96QT6 1004 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 MFN2O95140 757 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 CDH2P19022 906 aaPredicted RBP11.77□□□□□ -0.52
VPS33A-201ENST00000267199 CCR3P51677 355 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 FNBP1LQ5T0N5 605 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 ZNF618Q5T7W0 954 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 AAGABQ6PD74 315 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 KCNMB4Q86W47 210 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 MYO1HQ8N1T3 1032 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 PIDD1Q9HB75 910 aa11.77□□□□□ -0.52
VPS33A-201ENST00000267199 ERI2A8K979 691 aaKnown RBP11.77□□□□□ -0.53
VPS33A-201ENST00000267199 VAPBO95292 243 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 F9P00740 461 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 GSSP48637 474 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 RPL14P50914 215 aaKnown RBP11.77□□□□□ -0.53
VPS33A-201ENST00000267199 LSM3P62310 102 aaKnown RBP11.77□□□□□ -0.53
VPS33A-201ENST00000267199 IL5RAQ01344 420 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 NANOGNBQ7Z5D8 188 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 ARL10Q8N8L6 244 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 C10orf82Q8WW14 230 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 MTG1Q9BT17 334 aaPredicted RBP11.77□□□□□ -0.53
VPS33A-201ENST00000267199 MRPS26Q9BYN8 205 aaKnown RBP11.77□□□□□ -0.53
VPS33A-201ENST00000267199 UTP6Q9NYH9 597 aaKnown RBP11.77□□□□□ -0.53
VPS33A-201ENST00000267199 LGALS13Q9UHV8 139 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 TMCO1Q9UM00 188 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 H2AFYO75367 372 aaKnown RBP11.77□□□□□ -0.53
VPS33A-201ENST00000267199 DGCR6Q14129 220 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 KIAA0319LQ8IZA0 1049 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 C12orf29Q8N999 325 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 CLEC4DQ8WXI8 215 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 SPATA17Q96L03 361 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 OMDQ99983 421 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 LATS2Q9NRM7 1088 aa11.77□□□□□ -0.53
VPS33A-201ENST00000267199 ATP6AP2A0A1C7CYW4 349 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 ATP6AP2O75787 350 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 RHOBTB1O94844 696 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 LRPAP1P30533 357 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 WASHC5Q12768 1159 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 NR1D2Q14995 579 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 DEPDC1Q5TB30 811 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 TAF2Q6P1X5 1199 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 SAPCD2Q86UD0 394 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 TRIM74Q86UV6 250 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 TRIM73Q86UV7 250 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 TAGAPQ8N103 731 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 FAM47BQ8NA70 645 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 CPXM1Q96SM3 734 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 XPNPEP1Q9NQW7 623 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 COPG2Q9UBF2 871 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 TNFSF13BQ9Y275 285 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 COQ4Q9Y3A0 265 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 HBS1LQ9Y450 684 aaKnown RBP11.76□□□□□ -0.53
VPS33A-201ENST00000267199 KPNA4O00629 521 aaPredicted RBP11.76□□□□□ -0.53
VPS33A-201ENST00000267199 LDLRP01130 860 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 NR2C2P49116 596 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 GRIK4Q16099 956 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 GNASQ5JWF2 1037 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 DNAJC14Q6Y2X3 702 aaPredicted RBP11.76□□□□□ -0.53
VPS33A-201ENST00000267199 EGFL6Q8IUX8 553 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 BLOC1S5Q8TDH9 187 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 CPT1BQ92523 772 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 PLGRKTQ9HBL7 147 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 GNEQ9Y223 722 aaKnown RBP11.76□□□□□ -0.53
VPS33A-201ENST00000267199 HES2Q9Y543 173 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 MYH15Q9Y2K3 1946 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 LRCH4O75427 683 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 BPGMP07738 259 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 PGAM1P18669 254 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 PSME3P61289 254 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 CYP1B1Q16678 543 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 SPATA6LQ8N4H0 392 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 URGCPQ8TCY9 931 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 FAR2Q96K12 515 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 AAR2Q9Y312 384 aaKnown RBP11.76□□□□□ -0.53
VPS33A-201ENST00000267199 KAT6AQ92794 2004 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 TSPAN3O60637 253 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 TRMUO75648 421 aaKnown RBP11.76□□□□□ -0.53
VPS33A-201ENST00000267199 TSPAN8P19075 237 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 CHRM3P20309 590 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 RAB27AP51159 221 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 NAA20P61599 178 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 POU4F1Q01851 419 aa11.76□□□□□ -0.53
VPS33A-201ENST00000267199 TAF1CQ15572 869 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms