RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 KAT5Q92993 513 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 TRPC4Q9UBN4 977 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 DYTNA2CJ06 578 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 C1QTNF3-AMACRE9PGA6 284 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 NR5A2O00482 541 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 CATP04040 527 aaKnown RBP19.48■□□□□ 0.71
UPF1-201ENST00000262803 PPM1AP35813 382 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 PPP3CAQ08209 521 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 CCDC81Q6ZN84 652 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 GLT6D1Q7Z4J2 308 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 EPS8L1Q8TE68 723 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 TRIT1Q9H3H1 467 aaKnown RBP19.48■□□□□ 0.71
UPF1-201ENST00000262803 TCF7L2Q9NQB0 619 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 ZNF510Q9Y2H8 683 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 ANKRD63C9JTQ0 380 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 EPHB6O15197 1021 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 HS6ST1O60243 411 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 GJB6O95452 261 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 ZNF24P17028 368 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 ATN1P54259 1190 aaPredicted RBP19.48■□□□□ 0.71
UPF1-201ENST00000262803 SHROOM1Q2M3G4 852 aaPredicted RBP19.48■□□□□ 0.71
UPF1-201ENST00000262803 ZBTB45Q96K62 511 aaPredicted RBP19.48■□□□□ 0.71
UPF1-201ENST00000262803 KLHL4Q9C0H6 718 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 ENTPD4Q9Y227 616 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 BCL9O00512 1426 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 ZNF862O60290 1169 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 CCNT2O60583 730 aaKnown RBP19.48■□□□□ 0.71
UPF1-201ENST00000262803 SLC2A4P14672 509 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 CDH8P55286 799 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 TBL3Q12788 808 aaKnown RBP19.48■□□□□ 0.71
UPF1-201ENST00000262803 LGI2Q8N0V4 545 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 KLHL3Q9UH77 587 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 ASGR1P07306 291 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 TTMPQ5BVD1 217 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 BDH2Q9BUT1 245 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 ADI1Q9BV57 179 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 PQBP1O60828 265 aaKnown RBP19.47■□□□□ 0.71
UPF1-201ENST00000262803 LTFP02788 710 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 RAB14P61106 215 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 WASHC2DQ5SRD0 308 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 SNX30Q5VWJ9 437 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 TMEM26Q6ZUK4 368 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 ETNPPLQ8TBG4 499 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 ACOX2Q99424 681 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 FBXO10Q9UK96 956 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 PSME2Q9UL46 239 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 TRIM13O60858 407 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 GPR15P49685 360 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 ITGA1P56199 1179 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 RRP1BQ14684 758 aaKnown RBP19.47■□□□□ 0.71
UPF1-201ENST00000262803 SETMARQ53H47 684 aaPredicted RBP19.47■□□□□ 0.71
UPF1-201ENST00000262803 ZFP28Q8NHY6 868 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 SLITRK2Q9H156 845 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 KCNMB3Q9NPA1 279 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 TAS2R14Q9NYV8 317 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 TMEM216Q9P0N5 145 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 VWDEQ8N2E2 1590 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 SLC1A6P48664 564 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 NUMBP49757 651 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 SMARCB1Q12824 385 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 POU6F1Q14863 301 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 ANGPT1Q15389 498 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 ALG11Q2TAA5 492 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 AGKQ53H12 422 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 NEK5Q6P3R8 708 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 KYQ8NBH2 561 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 HAS1Q92839 578 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 HSFY1Q96LI6 401 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 MMADHCQ9H3L0 296 aaPredicted RBP19.47■□□□□ 0.71
UPF1-201ENST00000262803 ATAD3AQ9NVI7 634 aa19.47■□□□□ 0.71
UPF1-201ENST00000262803 POMCP01189 267 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 ANXA6P08133 673 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 NTSP30990 170 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 TLX1P31314 330 aaPredicted RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 SNRPD1P62314 119 aaKnown RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 GRIK3Q13003 919 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 PTAR1Q7Z6K3 402 aaPredicted RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 ZCCHC9Q8N567 271 aaKnown RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 CDH9Q9ULB4 789 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 ZNF682O95780 498 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 MIPP30301 263 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 NOS2P35228 1153 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 CHKAP35790 457 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 ATP5C1P36542 298 aaKnown RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 MMP13P45452 471 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 RFX3P48380 749 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 PARP6Q2NL67 630 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 AADACL2Q6P093 401 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 KATNAL2Q8IYT4 538 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 ZNF75CPQ92670 426 aaPredicted RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 CELF6Q96J87 481 aaKnown RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 BBS4Q96RK4 519 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 BTBD10Q9BSF8 475 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 SAE1Q9UBE0 346 aaPredicted RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 WDR27A2RRH5 827 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 GSTM1P09488 218 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 CLK3P49761 638 aaKnown RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 PSMD7P51665 324 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 CASP12Q6UXS9 341 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 EID3Q8N140 333 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms